Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27450 368 / 4e-130 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 326 / 2e-113 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT5G43830 225 / 8e-74 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G22850 216 / 3e-70 Aluminium induced protein with YGL and LRDR motifs (.1) AT5G19140 192 / 6e-61 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT5G10240 53 / 1e-07 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 52 / 1e-07 ASN2 asparagine synthetase 2 (.1.2) AT3G47340 49 / 1e-06 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034883 [exp] 504 / 0 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10018484 [exp] 259 / 8e-87 AT4G27450 305 / 3e-105 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10011191 [exp] 250 / 3e-83 AT4G27450 303 / 2e-104 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10041181 [exp] 226 / 6e-74 AT5G43830 369 / 1e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10006624 [exp] 221 / 5e-72 AT5G43830 374 / 2e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10039382 [exp] 221 / 6e-72 AT5G43830 372 / 6e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10010505 [exp] 189 / 2e-59 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10034038 [exp] 184 / 6e-58 AT5G19140 389 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10021899 [exp] 94 / 2e-21 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122100 [exp] 377 / 2e-133 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 370 / 1e-130 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 317 / 1e-109 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.004G040600 [exp] 308 / 3e-106 AT4G27450 366 / 2e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G158400 [exp] 234 / 4e-77 AT5G43830 388 / 3e-138 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.010G081600 [exp] 226 / 4e-74 AT5G43830 391 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G203400 [exp] 181 / 1e-56 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2) Potri.001G278400 [exp] 55 / 2e-08 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.009G072900 [exp] 55 / 2e-08 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 42 / 0.0002 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF12481 [flax] [poplar] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Lus10033418 pacid=23172216 polypeptide=Lus10033418 locus=Lus10033418.g ID=Lus10033418.BGIv1.0 annot-version=v1.0 ATGTTGGGGATGTTCCAAAAAACTTGCGCTCACCCACCGGAGGAGTTGAATAGCCCATCACAAACCAAGCAGCCAAAGATGCTTCCGGACGCCCTGCTGA GGGAGTTCATCACCCGCCACCCCAACAACTCTTTCTCCGTCAGCTTCGGGGCCGAATCGGCGGCGTTGGGTTACGGCCGGCCCGTCCGACCAGAGAACCC TTTCGCCCGCGGGCACCAGAGGCTGTTCTGCGCCGTGGATGAGATGTACTGCCTTTTCGTAGGAAGCTTGAATAACTTGTGTAGCCTGAACCGGCAGTAC GGGTTGACGGGGAGCTCCAGCAGTAACGAGGCGATGCTTGTAATCGAGGCTTATAGAACGCTTAGAGACAGAGGACCTTACCCTGCTGACCAGGTTGTGA AGGATTTTGATGGGAGCTTTGCCTTCCTTGTTTATGATAGCAAGGCTGCTACTGTCTTTGTTGCCCTGTCGTCAGATGGGGGAGTGAAACTGTACTGGGG GATAGCAGCTGATGGGTCGGTGGTGATATGCGATGATCTACAAGTGATTAAAGCTGGCTGTGCCAAGTCTTTTGCTCCTTTCCCCCCTGGGTTCATGTTC CATAGTGAGGGAGGGCTTATGAACTTCGAACACCCGATGCACAAAATAAGAGCAATCCCAAGAACGGATAGCGAAGGAGTGGTGTGCGGGGCCAATTTCA AAGTTGATTTGTATCAAAGGATCAACAGTATTCCTCGCAACGGAAGCGCTGCCAATTGGACTCAATGGGACTCCCATTCCTAA
AA sequence Show only first row Show all	>Lus10033418 pacid=23172216 polypeptide=Lus10033418 locus=Lus10033418.g ID=Lus10033418.BGIv1.0 annot-version=v1.0 MLGMFQKTCAHPPEELNSPSQTKQPKMLPDALLREFITRHPNNSFSVSFGAESAALGYGRPVRPENPFARGHQRLFCAVDEMYCLFVGSLNNLCSLNRQY GLTGSSSSNEAMLVIEAYRTLRDRGPYPADQVVKDFDGSFAFLVYDSKAATVFVALSSDGGVKLYWGIAADGSVVICDDLQVIKAGCAKSFAPFPPGFMF HSEGGLMNFEHPMHKIRAIPRTDSEGVVCGANFKVDLYQRINSIPRNGSAANWTQWDSHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	0	1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10026088 [exp]	1.0	0.9576
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	1.4	0.9517
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10000286 [exp]	2.8	0.9466
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	5.5	0.9396
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	5.7	0.9487
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	6.7	0.9414
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040031 [exp]	6.9	0.8992
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	8.9	0.9199
					Lus10038520 [exp]	12.4	0.9395
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	13.1	0.9375

Compare expression of checked genes

Lus10033418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.