Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74960 678 / 0 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT5G46290 434 / 2e-149 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT2G04540 195 / 9e-57 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034886 [exp] 835 / 0 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10040883 [exp] 433 / 7e-149 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10025390 [exp] 425 / 6e-146 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10015267 [exp] 426 / 1e-137 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10003195 [exp] 392 / 7e-133 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10001814 [exp] 391 / 6e-131 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 340 / 6e-114 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10014622 [exp] 208 / 1e-61 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 190 / 2e-54 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138000 [exp] 709 / 0 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.018G062900 [exp] 697 / 0 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.011G079700 [exp] 430 / 5e-148 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 429 / 2e-147 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.001G088700 [exp] 423 / 1e-144 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 408 / 7e-139 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.002G219500 [exp] 199 / 3e-58 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00109 [flax] [poplar] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [flax] [poplar] Thiolase PF02801 [flax] [poplar] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033422 pacid=23172186 polypeptide=Lus10033422 locus=Lus10033422.g ID=Lus10033422.BGIv1.0 annot-version=v1.0 ATGAACTCTTGTTTGGCTTTTGAGCCTTGTAGCCATTACTACACCTCCAATGCCGTCTTCGGATACAGGTCTTTCAATCGAAAGCAGAGAAGACTCCGTC GCCCTGCCTATCCGGGCGAAGCAATGGCTGTGGCTCTGCAACCTGCAAAAGAAGCTGGCGCCAAAACAAAACCGCTTACGAAGCAAAGGCGTGTAGTTGT GACTGGCATGGGTCTTGTGTCTCCCCTTGGTCACGATGTTGATGTCTTTTACGATAATCTGCTGCAAGGTGTTAGTGGTATAAGTGAGATAGAGACTTTT GATTGCTCCGAATTCCCAACTAGAATTGCCGGGGAGATCAAGTCTTTCTCAACGGATGGATGGGTTACACCCAAGTTTTCCAAGAGAATGGATAAGTTCA TGCTTTACATGCTTATTGCGGGGAAAAAGGCTTTGGCATATGGCGGAGTTACTGAGGATGTAATGAATGAGTTAGATAAAGCTAAATGTGGAGTTCTGAT TGGTTCAGGAATGGGTGGCATGAAGGTTTTCAATGATGCTATTGAAGCTCTAAGGGTCTCGTACAGAAAAATGAACCCGTTCTGTGTACCATTTGCAACT ACAAATATGGGTTCTGCCATGCTAGCAATGGATATTGGTTGGATGGGGCCGAACTATTCCATTTCGACAGCTTGTGCTACAAGCAACTTTTGTATATTAA ATGCAGCTAACCATATTATTAGAGGCGAAGCTGACATGATGCTTTGTGGTGGCTCAGATGCAGTTATAATTCCCATCGGTTTGGGAGGCTTTGTGGCATG CAGAGCGCTCTCAAAAAGGAATGAAGATCCTACTAAGGCCTCACGACCTTGGGATAAAAATCGGGATGGATTCGTTATGGGTGAAGGAGCCGGTGTTCTT CTTTTGGAAGAGCTAGAACATGCAAAGAGCAGAGGTGCCAACATATATGCAGAATTTCTTGGGGGTAGCTTTACTAGCGATGCTTACCATATGACTGAGC CACACCCTGATGGTTCCGGAGTCATTCTATGCATAGAGAGGGCTTTAGCACAATCTGGAGTAGCTAGGGAAGATGTCAACTACATAAATGCACATGCTAC ATCAACTCTTGCTGGAGATCTTAAAGAGTATCAGGCTCTAATGCACTGTTTTGGCAAAAATCCTGATTTAAAGGTGAACTCAACGAAGTCTATGATTGGC CACTTACTTGGGGCAGCTGGTGGTGTGGAAGCTATTGCAGCAATACAGGCAATACGGACAGGATGGGTTCATCCAAATATAAATCTGGAAAGTCCGGATG ACGGCATATGCTCTTCAGGAGGGGATGCTGTTCATTGTTTCACAGCAGCGAATGTAAATGTGACTTTTACAGCGAAAAGAAAGAGAAATGGCGATGAATG A
AA sequence Show only first row Show all	>Lus10033422 pacid=23172186 polypeptide=Lus10033422 locus=Lus10033422.g ID=Lus10033422.BGIv1.0 annot-version=v1.0 MNSCLAFEPCSHYYTSNAVFGYRSFNRKQRRLRRPAYPGEAMAVALQPAKEAGAKTKPLTKQRRVVVTGMGLVSPLGHDVDVFYDNLLQGVSGISEIETF DCSEFPTRIAGEIKSFSTDGWVTPKFSKRMDKFMLYMLIAGKKALAYGGVTEDVMNELDKAKCGVLIGSGMGGMKVFNDAIEALRVSYRKMNPFCVPFAT TNMGSAMLAMDIGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDAVIIPIGLGGFVACRALSKRNEDPTKASRPWDKNRDGFVMGEGAGVL LLEELEHAKSRGANIYAEFLGGSFTSDAYHMTEPHPDGSGVILCIERALAQSGVAREDVNYINAHATSTLAGDLKEYQALMHCFGKNPDLKVNSTKSMIG HLLGAAGGVEAIAAIQAIRTGWVHPNINLESPDDGICSSGGDAVHCFTAANVNVTFTAKRKRNGDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	0	1
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	2.4	0.8391
AT4G35335			Nucleotide-sugar transporter f...		Lus10026562 [exp]	2.8	0.8677
AT3G02900			unknown protein		Lus10009524 [exp]	3.3	0.8026
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	4.2	0.8163
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	5.1	0.8451
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	7.1	0.8035
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	10.2	0.8068
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029403 [exp]	10.4	0.7683
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10034354 [exp]	17.5	0.7720
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	18.7	0.8248

Compare expression of checked genes

Lus10033422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.