Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19230 1120 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G64060 989 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT5G47910 858 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 847 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G07390 844 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT1G09090 833 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT4G11230 819 / 0 Riboflavin synthase-like superfamily protein (.1) AT4G25090 807 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 761 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 733 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034890 [exp] 1588 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10032308 [exp] 998 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 955 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 947 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10043017 [exp] 874 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10029896 [exp] 872 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10022434 [exp] 870 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10032517 [exp] 870 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10020644 [exp] 822 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137300 [exp] 1323 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.003G133300 [exp] 1028 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 1019 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.003G159800 [exp] 893 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.012G111600 [exp] 892 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.001G070900 [exp] 868 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.015G109800 [exp] 862 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.005G026200 [exp] 850 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.006G097200 [exp] 749 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 716 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10033423 pacid=23172085 polypeptide=Lus10033423 locus=Lus10033423.g ID=Lus10033423.BGIv1.0 annot-version=v1.0 ATGGAGGAGCTTATCTGCAAGCACCAGGCAAAGGAAGACTTATCTGCCACATCCAGGATAAGGAAGAAGTTCGGGTGGTTGAGATCGGGATCGTCGAGGA CCACCGCCTCAGAGATCGACGGAGGGGCTATCACGGAGAGAGATGCAAGGAGAATTAGGGCCAACCTTCAGCGGTCAAAATCAAGCGCTGAGCGGGCACT GAAGGGGCTCAAGTTCATAAGCAAGGCCAGTAGTAGCACGGTGGCCGGTGGGGGCGGCGACGCCGAGCAGCTGTGGCGGCGAGTCGAGTCTCGGTTTGAC TCACTGTCGTCCAGAGACGGATTCCTCGCAAGGGATGATTTTGGCGAGTGCATAGGGATGGTGGATTCGAAAGAGTTCGCGGGGAGTGTGTTCGACGCAT TGGCGAGGAGGAAAGGGCAGAGGATAAGTAGAATTACAAAGGAAGAGCTTCGGGAGTTTTGGTTGCAGATTACAGACCACAGTTTCGATGCTCGCCTCCA AATTTTCTTCGACATGGCAGACAGCAATGATGATGGAAGAATCACAAGGGAAGAGGTGCAGGAGTTGATAACACTGAGTGCTTCAGCTAATAAACTCTCC AAATTGAAAGAACAAGCTGAAGAATATGCAGGATTGATAATGGAGGAGCTTGATCCTGAAAATCTTGGATACATTGAGCTATGGCAGTTAGAAACACTAC TTCTTCGAAGGGACGCATACATGAACTACAGCAGGCCACTAAGCACTGCGAGCTTAGGGTGGAGTCAGAATTTGAGCACTAGATTTCAACCCCGAATCAT GGGTCGCAGGCTTACTTCGATGCTAAGGAGCATCATTGTCGAGAACTGGCAACGTGGTTGTATATTGACTCTATGGCTAATCCTAATGACTCTGCTCTTC GCATGGAAGTTCGTCAATTATAGAAACAGAGCTGCATTTCAAGTAATGGGCTACTGCCTCACAACTGCCAAAGGCGCTGCTGAGACTCTTAAGCTCAACA TGGCTCTAATCCTCTTGCCCGTCTGTCGAAACACCATTACCTGGCTTCGATCCACCAAAGCTAGGACCGTCATTCCTTTTGACGACAACATCAACTTCCA CAAGATGATTGCAGTGTCAATAGTAATCGGGGTTGTTCTTCACGCGGGGAACCATTTGGTCTGTGATTTCCCTCGTTTGACGAATGCCTCCCCGGAAAAG TTTTCCTTGATAGCATCTCAGTTCGACGGCAAGAAACCCACCTACAGAGATCTTATAAGCAGCGTTGAAGGCGTGACAGGAATCTCCATGGTGGTGCTAA TGGCCATTGCATTCACTCTCGCAACTAGTCAGTTCAGGAGGAATTTAGTGAAGTTGCCGGCGCCTTTCAACAGATTGACTGGGTTCAACGCCTTCTGGTA CTCTCATCACCTTACCGGAATAGTCTACATCTTGCTCTTTGTACATGGGACTTTCCTCTACCTCACTGACACGTGGTATGACAAAAATACATGGATGTAT CTTTCTGTTCCACTACTACTCTACGTAGTAGAGAGGACCATTCGAACGTGTCGATCAGAGCATCAGTCTGCCAAGATTATAAGGGTAACGGTTTTGCCAG GAGATGTGTTCAGCCTAACAATGTCGAAGCCACAAGGGTTTAAGTACAAGAGTGGCCAGTACATATTTCTTCAATGTCCATCGATTTCTTCCTTCGAGTG GCATCCATTCTCGATAACCTCAGCTCCAGGAGACGAATACCTTAGTGTCCATGTCCGGATTGTGGGTGACTGGACACAAGAATTGAAGCGAGTTTTCACT GAGGTTAACGACTCACCAACTGTTATTGGCCGAGCTAAATTCGGTCAACTCGGCCATATGGATCATAGAGGGCAACCAAAACTATATGTTGACGGTCCAT ATGGGGCTCCTGCACAAGACTATAAGAACTATGATGTACTGCTCCTTGTAGGGTTGGGTATTGGGGCTACCCCTTTCATCAGCATTCTCAGAGATCTGTT AAACAACACCAGAACAACAGACTATCAGACGGACTCAAATACAGATACAAGCAGATCAGATTACAGTTCAAACAGTTGCACATCTTCGAATGGGACAGGA GGGAACACTATTAAGAAGAAAACCGTGAGAACCACCAACGCTCACTTCTACTGGGTTACAAGAGAACCAGGGTCATTTGAATGGTTTAAAGGAGTCATGG ACGAAGTTGCAGAAATGGACCACAAAGGCCAAATTGAGATGCACAACTACTTGACAAGTGTATACGAAGAAGGTGATGCAAGGTCAACTTTGATTACCAT GGTTCAAGCGCTTAACCACGCCAAACATGGAGTTGACATCGTTTCTGGCACTAGAGTAAGAACACACTTCGCCAGACCAAATTGGAGAGAAGTTTTCACC AAAATAGCTTCAAAGCATCCGTTCGCAACAATAGGGGTGTTCTATTGCGGGATGCCTACGTTAGCAAAGGAGCTAAAGAAGCTAAGTCAAGAGATGAGTC ATAGGACGTCTACACGGTTCGAATTTCACAAGGAATACTTCTGA
AA sequence Show only first row Show all	>Lus10033423 pacid=23172085 polypeptide=Lus10033423 locus=Lus10033423.g ID=Lus10033423.BGIv1.0 annot-version=v1.0 MEELICKHQAKEDLSATSRIRKKFGWLRSGSSRTTASEIDGGAITERDARRIRANLQRSKSSAERALKGLKFISKASSSTVAGGGGDAEQLWRRVESRFD SLSSRDGFLARDDFGECIGMVDSKEFAGSVFDALARRKGQRISRITKEELREFWLQITDHSFDARLQIFFDMADSNDDGRITREEVQELITLSASANKLS KLKEQAEEYAGLIMEELDPENLGYIELWQLETLLLRRDAYMNYSRPLSTASLGWSQNLSTRFQPRIMGRRLTSMLRSIIVENWQRGCILTLWLILMTLLF AWKFVNYRNRAAFQVMGYCLTTAKGAAETLKLNMALILLPVCRNTITWLRSTKARTVIPFDDNINFHKMIAVSIVIGVVLHAGNHLVCDFPRLTNASPEK FSLIASQFDGKKPTYRDLISSVEGVTGISMVVLMAIAFTLATSQFRRNLVKLPAPFNRLTGFNAFWYSHHLTGIVYILLFVHGTFLYLTDTWYDKNTWMY LSVPLLLYVVERTIRTCRSEHQSAKIIRVTVLPGDVFSLTMSKPQGFKYKSGQYIFLQCPSISSFEWHPFSITSAPGDEYLSVHVRIVGDWTQELKRVFT EVNDSPTVIGRAKFGQLGHMDHRGQPKLYVDGPYGAPAQDYKNYDVLLLVGLGIGATPFISILRDLLNNTRTTDYQTDSNTDTSRSDYSSNSCTSSNGTG GNTIKKKTVRTTNAHFYWVTREPGSFEWFKGVMDEVAEMDHKGQIEMHNYLTSVYEEGDARSTLITMVQALNHAKHGVDIVSGTRVRTHFARPNWREVFT KIASKHPFATIGVFYCGMPTLAKELKKLSQEMSHRTSTRFEFHKEYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19230			Riboflavin synthase-like super...		Lus10033423 [exp]	0	1
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10043357 [exp]	1.4	0.8850
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	6.5	0.8945
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Lus10030680 [exp]	16.8	0.8265
AT4G12010			Disease resistance protein (TI...		Lus10028060 [exp]	18.3	0.8703
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	18.4	0.8817
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	20.4	0.8781
					Lus10002087 [exp]	22.8	0.8710
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	25.0	0.8648
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	25.6	0.8678
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	25.8	0.8437

Compare expression of checked genes

Lus10033423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.