Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26060 278 / 1e-95 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) AT5G06290 79 / 1e-17 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 76 / 2e-16 Thioredoxin superfamily protein (.1) AT1G48130 47 / 3e-06 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT2G25080 41 / 0.0002 ATGPX1 glutathione peroxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034892 [exp] 407 / 9e-147 AT3G26060 281 / 6e-97 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10016969 [exp] 82 / 1e-18 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10021295 [exp] 82 / 1e-18 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10018342 [exp] 42 / 9e-05 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10026887 [exp] 42 / 0.0001 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10017112 [exp] 41 / 0.0003 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1) Lus10003421 [exp] 40 / 0.0007 AT4G31870 319 / 9e-110 glutathione peroxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137500 [exp] 317 / 3e-111 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.018G063300 [exp] 306 / 9e-107 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G204900 [exp] 82 / 1e-18 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.016G072100 [exp] 77 / 5e-17 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.008G099900 [exp] 42 / 0.0001 AT1G48130 322 / 2e-111 1-cysteine peroxiredoxin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Lus10033424 pacid=23172046 polypeptide=Lus10033424 locus=Lus10033424.g ID=Lus10033424.BGIv1.0 annot-version=v1.0 ATGGCTTCCATTTCGCTTCCGAAGCATTGTTCCATTTGTCCAACAATCTGGTCTCCTAATAAACCCATATTTCCATCTTCCCAACATCTACCATATAATT CTCAGCCCAAATTCAATGGCCTCAGGTTCTCCAATTCCGTCACTGCACCTCGTCATCTCGCTTTCAAGCCCTCCATCGTCGCTGCGAAGGTGAACAAAGG TCAGGTACCACCATCCTTCACATTGAAAGATCAAGATGGTAAGGCTGTAAGCCTCTCCAAGTTCAAGGGCAAGCCTGTAGTTCTCTATTTCTATCCGGCT GATGAATCCCCTAGCTGCACTAAACAGGCTTGTGCTTTCAGGGATTCGTATGAGAAGTTTAAGAAAGCAGGAGCTGAGGTTGTTGGGATTAGTGGTGATG ATTCATCGTCTCACAAGTCATTTGCTAAGAAGTATAGGCTGCCATTTACATTACTTAGCGACGAGGGTAACAAAGTAAGGAAAGATTGGGGTGTCCCTTC TGATCTTTTTGGAGCATTGCCTGGGAGACAGACTTATGTTTTGGATAAGAAGGGAGTGGTTCAGCTCATCTATAATAACCAGTTCCAACCTGAGAAGCAC ATTGATGAAACTCTCAAGCTACTTCAAACGCTTTGA
AA sequence Show only first row Show all	>Lus10033424 pacid=23172046 polypeptide=Lus10033424 locus=Lus10033424.g ID=Lus10033424.BGIv1.0 annot-version=v1.0 MASISLPKHCSICPTIWSPNKPIFPSSQHLPYNSQPKFNGLRFSNSVTAPRHLAFKPSIVAAKVNKGQVPPSFTLKDQDGKAVSLSKFKGKPVVLYFYPA DESPSCTKQACAFRDSYEKFKKAGAEVVGISGDDSSSHKSFAKKYRLPFTLLSDEGNKVRKDWGVPSDLFGALPGRQTYVLDKKGVVQLIYNNQFQPEKH IDETLKLLQTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10033424 [exp]	0	1
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10034892 [exp]	1.0	0.9732
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10037372 [exp]	4.9	0.9667
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	6.2	0.9599
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	8.9	0.9537
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	9.5	0.9503
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	11.5	0.9479
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10009622 [exp]	12.4	0.9117
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	14.7	0.9336
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	15.3	0.9331
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	15.6	0.9247

Compare expression of checked genes

Lus10033424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.