Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10910 75 / 5e-17 RING/U-box superfamily protein (.1) AT5G01880 74 / 6e-17 RING/U-box superfamily protein (.1) AT4G35480 72 / 1e-15 RHA3B RING-H2 finger A3B (.1) AT2G17450 70 / 3e-15 RHA3A RING-H2 finger A3A (.1) AT5G66070 70 / 6e-15 RING/U-box superfamily protein (.1.2) AT2G17730 70 / 8e-15 NIP2 NEP-interacting protein 2 (.1.2) AT4G35840 70 / 1e-14 RING/U-box superfamily protein (.1) AT5G05280 67 / 4e-14 RING/U-box superfamily protein (.1) AT2G27940 66 / 2e-13 RING/U-box superfamily protein (.1) AT1G20823 66 / 2e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013210 [exp] 73 / 4e-16 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1) Lus10030728 [exp] 71 / 3e-15 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10005815 [exp] 70 / 7e-15 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10021524 [exp] 71 / 8e-15 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10022743 [exp] 68 / 3e-14 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10036380 [exp] 67 / 4e-14 AT5G05280 96 / 2e-25 RING/U-box superfamily protein (.1) Lus10025145 [exp] 67 / 4e-14 AT5G01880 96 / 6e-26 RING/U-box superfamily protein (.1) Lus10028406 [exp] 68 / 6e-14 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 68 / 6e-14 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243200 [exp] 71 / 1e-15 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 70 / 4e-15 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.005G113200 [exp] 70 / 5e-15 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.010G243500 [exp] 69 / 6e-15 AT5G06490 113 / 6e-32 RING/U-box superfamily protein (.1) Potri.007G057300 [exp] 69 / 1e-14 AT2G17450 66 / 1e-13 RING-H2 finger A3A (.1) Potri.003G075200 [exp] 68 / 1e-14 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 69 / 3e-14 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.001G400600 [exp] 66 / 5e-14 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.013G073500 [exp] 69 / 6e-14 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.005G108200 [exp] 68 / 6e-14 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033425 pacid=23172170 polypeptide=Lus10033425 locus=Lus10033425.g ID=Lus10033425.BGIv1.0 annot-version=v1.0 ATGGCACGAACAATAAGGTTTGTCCCAGAAAATGTCACTACTGTGGGGGATATGATATCTGGTACCATTCCAGAAACAACGAGCTCCGTGATAGCAGAAT ATCTCCATCACAATTTGGTGGTGGTACTAGTTGTGGTGATAATCCCATTGGTTTTCATGACGATCATCTGCGTGCTTGTGGCATCCTTGGTGGTCATGAT TGTTTACATGCTTTACGAGTTCGTCTATTGGCGCGTGTTCGAAAACGACGGTGAGGGGAACTCCGATCTCGAAGAGGCCGCGGAGAGGAGGAGAAGACGG CGGCGACAGAGTAAGTACCAAAGATTGATGATGAAATTGCATTGTGTTGAGTATGGAAGCGGTGAAACGGAGACCAAATCTGGAGAGTGTGCAATTTGTT TGGAGGATTACAATGTGGGAGAGCTTTGTAGAATAATGCCTGAATGCAGTCACATGTTTCATGTCGACTGTATTGACAATTGGCTCAACCTCAAAATCTC ATGCCCTATGTGTCGACGATGTGTATTCAATTTGATGACTGAGCCGTCATAG
AA sequence Show only first row Show all	>Lus10033425 pacid=23172170 polypeptide=Lus10033425 locus=Lus10033425.g ID=Lus10033425.BGIv1.0 annot-version=v1.0 MARTIRFVPENVTTVGDMISGTIPETTSSVIAEYLHHNLVVVLVVVIIPLVFMTIICVLVASLVVMIVYMLYEFVYWRVFENDGEGNSDLEEAAERRRRR RRQSKYQRLMMKLHCVEYGSGETETKSGECAICLEDYNVGELCRIMPECSHMFHVDCIDNWLNLKISCPMCRRCVFNLMTEPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10910			RING/U-box superfamily protein...		Lus10033425 [exp]	0	1
					Lus10040835 [exp]	3.7	0.7666
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	5.9	0.7239
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	6.2	0.7544
AT5G23070			Thymidine kinase (.1)		Lus10016925 [exp]	6.5	0.7430
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	7.7	0.7483
AT2G29880			unknown protein		Lus10005028 [exp]	8.8	0.6968
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	9.7	0.7466
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10001430 [exp]	10.0	0.7642
AT5G01140			Protein of unknown function (D...		Lus10040317 [exp]	13.0	0.6486
					Lus10009381 [exp]	14.7	0.7224

Compare expression of checked genes

Lus10033425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.