Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03140 1195 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G50790 145 / 7e-37 esterase/lipase/thioesterase family protein (.1) AT5G49950 105 / 5e-23 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 105 / 8e-23 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034894 [exp] 1688 / 0 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001673 [exp] 145 / 1e-36 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 122 / 5e-29 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10035744 [exp] 110 / 3e-24 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 106 / 3e-23 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 104 / 2e-22 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 103 / 5e-22 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 100 / 3e-21 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G136900 [exp] 850 / 0 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G146500 [exp] 152 / 6e-39 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.013G115000 [exp] 101 / 9e-22 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G223100 [exp] 100 / 3e-21 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10033426 pacid=23172047 polypeptide=Lus10033426 locus=Lus10033426.g ID=Lus10033426.BGIv1.0 annot-version=v1.0 ATGAATTCCACACTTCAACTTCAACTTCAACTTCATCCCCAGCCACACCTCTTCTGTCGCAACTTCCCATTCCCACCTCCTCAATTCCGTCTCAACCACC GCCGCCACCGTCTCAAATCCCTCCTCCTCTGCACCGCTTTCCTAGAACCCTTCCAGACTTTCCTCACTCAGTTTCCCTCCTCTAATTCTCTAGACCTTCT CGCTCCCGCCATCGGTCTCGCTTCTGGTTTGACTCTCTACCTCAACCAAATCAAGTCCAGGAACAATCCCGACCGCCGAGCATCCAGTGACATCGGCGAA TGGATTCTTTTCACCACTCCCACGCCGTTTAATAGGTTTGTTGTTCTTCGTTGCCCTTCCATATCCTTTAAAGGGAACGAGCTTCTCGAGGGAGTTAATG AGAAGTTGGTGGAGCAGGACATGCATTTCGTGCGGCTGAACAGCGCCGGAATTCAGCTTAACGAGAATGGCGATGGCGGCTCGATTCTGGATAAATTGAA CTACCAAAGACTTTGCGTTAGCATGGAGGACGGTGGGGTTGTGTCACTCGATTGGCCGGCGAATTTGAACTTCGAGGATGAGCATGGCTTGGACACTACT TTATTGCTGGTGCCGGCCACGCCGGACGGCAGCACGGATCATACTGTCAGATCATTTGTCTGTGAAGCCCTGCGTCGCGGATTGTTCCCCATTGTAATGA ATCCTAGAGGCTGTGCTGGTTCACCACTCACCACTGCTAGGTTGTTTTCGGCTGCTGACAGCGATGATATATCCACAGTTATTCAGTCAATCAACAAAGC AAGGCCATGGACGACGCTGGTGGCTGTCGGGTGGGGCTACGGTGCAAACATGCTGACAAAGTATCTTGGAGAAGTTGGGGATTCGACTCCGCTTACAGCT GCCACTTGTATTAACAATCCTTTTGACTTGAAGGAGGTCAATAGGAGCTCACCCTATCACGTAGCTCTGGATCAAAAGCTCACTGCTGGGCTGGTTGATA TGCTACGTGCTAACAAGGGTCTGTTTCAAGGTAAAGCAAAAGGATTTGATGTGGACAAGGCTTTGTTAGCGAAATCTGTTCGAGATTTTGAGGAGGCAAT ATCCATGGTGTCTTATGGTTCCAAAGATATAGAAGACTTCTATTCCAAATCCAACACGGCACGTTTAGTAAACCATGTGAAAGTTCCTGTTCTCTTTATC CAGAATGATGATGACACTGTGCCACTCTTCTCGATACCCCGCAGTTCAATCGCTGAAAATCCTTGTACTAACCTCCTTCTATGTTCTTGCCCGCCACCTG GGGCCAAAACAAACAGCAGAGCAGCTCTGTCTTTGTTCCAAAATCTTACAATGGAGTGGCTCACAGCTGTGGAGCTTGGACTCTTGAAGGGTCGTCATCC TCTTCTTACTGATTTAGATGTTACTATCAATCTATCTAAAGGATCAACTCTTTCAGAAAGTGCAGTGGTTGACATTGATGGTCAAAGGAATGACCCCCTG GCTCTGACCGTAACTAATACTAATGGGAATCCCATAGACCTTTCTAACCAGCTTCTTGAAAGTAGCTCTAGTGAGGAGCGACTTAATTCCGGATCAGACA AAAACTGTGACAGTGATTTAGAAATTGAATCTGGATTACAAGAAGCAGAAACACAGGTCGTGCAGAAGACTTCAGATACAGATTTGCTTGAAGAAGAGTC ACCAAATCCAGCGGATGATGAAAACGGTGAAGTGCTACAATCAGCACAAGTAGTCATGAACATGCTTGACGTGGCTATGCCTGGTATTGTGGCAGAAGAT GAAAAGAAGAAGGTGTTGACAGCTGTAAATCAAGGAGAGAATCTTTTGAAAGCTTTGGAAGGTGCTGTACCAGAAGAAGTTCGTGAAAAGCTAACTACAG CAGCATCTGGAATTATGCAAGCTAATCGTATGAAATTAAAATTTGATGGACTGACGGGTACCAGAGATATCAAGCTGCCGAGTGTGTCAGGGTTGGAGTC AAATTCGCAAGGTGAATCAACTTCTCACAGCAAGCCAAAAGTCCCTCCAACAGATCAGATGAATATGACAAATATTTCAACAGACGCGAATGGGGATGAT CAGTCCGGAGTTCAAGACTCTAGTGGTGATCCAAAGCCTCTCCCTTCTGATAACTTGAAGAAATCTGTTGATTCAGGTCAGCCTCGGGATATGACTGATC GACAAAGTGATACTCTTGCTTCTTCTAGGGCCGGAATGAATGAGTCGGATCATGCTAGTGATACAGCTACAGGAGAAAGTGCTGGGGATAAAAAACCGGA AGCTAGTGTTGAGTCTGATACTCAAGGGGCTGGTAGTGGTGAGGAAGCCAGTACTAATGATCAGGAATCACAAAAATATGATAAATCACCAGCGCATCTA GAAATGGAAAAGGAGAACAATGATGGAGCAAAGGCTGTGGATCCTTCTAGTGATCAGAGTAAGGCCGCATCGGCTAATGCAAGTGAAGAAGGAATCCTTA ATCCCCAATCGACAGGAAAGGAAGGAAATGATGATCAGAAGAGTGATAAAAACAGTGAGCAGCCTGCACTTGAACAAAACAAGCCTCCTATTTCTGACCC AAGTCCTCCTAATTTTGATGTCGTTCAAGCCTTGGACGCTTTCACGGGGATGGATGATTCTACTCAAGTAGCCGTTAACAGTGTTTTTGGTGTGATTGAA AATATGATCGATCAGTTGGAAGAGGAGAAGGATAATAAAGATGACGTCAATGACGGAAATGAGGTTGAAGATGAATCGAATGATCCTGGATCCATTGAAC AGAAGAAATTCGATCAGTCAGCACAGGCTGGAAACATTTCTAGTAATGCTGAGAGGGTTGTCAATAACTATAGAAGCCAGGAGGAAACGCCTGACCAGTT ATTTGGTGACAAGAGTGCGGTCAACTGTAATAGCATGACGAGTGATATCCCAATGCTTATAACCAAAAATTCCCAGAATGCTTATGTCGACGAGTGTCTT CTGGATAAGGTGCCAAGACCCAAACCACTGGATCTGGATAAAGCTACTGCTTTACTGGTTGACTATGTCCCAGAAGATGGTCAATGGAAGCTTTTGGAAC AATCTGTCAATGATGCTTCAGTTAGTAACGATGTTCAAGGAAAGGACAAGGACCATCTAAATGCAGGGGTGAATAGTGGAAGCGATTTTATTGTGCCCTC ATATGTTGTGTTAGATGCTGAAACCCGGCAGGAAAGTTTCAACAAGAAGGCTGAAAATGCACCCAACACAGAAGATCTTATACATTTTGTGAAGAACATT ATCTTGGGTGCATTGAAGGTTGAGGTTTGTCGCAAGCTGAGTGTGGCTGAGCTAAGAAAAATGAAATCTGATATTGGAAGCGATATTGAACTTCTGGCTA ATGCTGTGTCTTTGGTAGTTGGGAATGACAAGCATCAAAACTTCAATGAGAAAAACAGTACGGTCAATCATACTTCAGAAATAGCTGATTCCATACAGGC GGAAAAAATTCTGGAGGCCATATCATCATCTTTCTTGCGAACAACTTATTTGAGAAAAATTTTGCCAGTTGGAGTGATAGTAGGTTGTACCTTAGCTGCT TTGAGGAAACATTTCTACATAACTACAGTACCTAACGACCGTCTTGAATCATATGATCAAAATAACAGAGCTTTGGAAAATTATCAAGGTGAAATTAAGA CGCAAAAGGATGATGAAAAGCAAAGACTTGGAGTTCCTTCTTTGAACCCTACGAGAAATAAAGAGGGTGACGGTAATGTTTTCAAGAACATGAGTAATGA CAGTGTTATGGTTGGTGCTGTTACTGCTGCCCTTGGAGCTTCTGCTTTGTTTGGACTACAGAACGAAAATGAAATAGTAGAAATCTCAGCAGAGTACATG AATGAGAGTGGAAGCTCTAACATGGCTTTAGACAAGCTTGATGATGGAATGTCTACGAACGATCAAAACAACGCAGTTGCAAGCTTTGCTGAGAAAGCCA TGTCAGTTGCTGGTCCAGTGGTTCCTACAAAGGGAGATGGTGAGGTGGATCAAGACAGGCTAGTTTCAATGTTAGCCGGCCTGGGACAAAGAGGGGGCAT TTTGAGAGTGGTCGGCAAAGTTGCTTTACTGTGGGGTGGTCTACGTGGAGCTATGAGTCTGACTGACAGGCTTATCTCATTTTTGGATATAGCTGACCGA CCCTTTTACCAAAGGATTCTGGGGTTTGTTGGAATGGCTCTTGTTTTATGGTCACCAGTGGTTATCCCATTGCTTCCAACACTAGTTCAGGGTTGGACGA CTGGTACTCCTTCAAGGTTTGCTGAGCTTATATCAATCCTGGGGCTCTATGCTGCTATTTTGTTGCTTGTTATGAAGTGGGCCAGTAAAATACGTGGTTA TGAACATCCACTCAAACAATATGGACTTGATTTCACTACATTGCCTAAGATAAAAAGCTTTCTCGCTGGTTTAGGTGGCGGAGTGGGACTCGTTTTACTT ATGCAATCTCTAAATGTATGCTTGGGCTATGCGAGCTTTTCTTGGCCCGCAAGTCATCCTCCTTCGGCGAATCTGATTGAAGATCTGAAAGTGTACGGTA AAATGATTTTGTTTTCCGTACAAGGTACTATAACAGCAACCGCAGTGGTCCTTGTTGAAGAGCTGCTATTCAGGTCCTGGTTGCCTGGAGAAATTGCGGC GGACCTTGGTTATCATCGTGGAATCATCATTTCTGGACTTGTATTTGCACTTGCGCAGAGGTCTCCATGGGCGGTCCCAGCACTCTGGCTTCTGTCTTTG GCTCTGTCTGGGATAAGGAAAAGAAGCCAAGGGAGCCTCTCGACGGTGATTGGCTTACGGGCAGGAATGGTGGTTTCGAGCTTTGTTCTTCAGAGTAGAG GAGTCTTGACGTACAAAGACACGCTCCCTTTGTGGCTCACAGGGAGTCATCCCTTCCAACCTTTCAGTGGGATCATCGGTCTTGCATTTTCTTTATTCAT GGCGGTCCTTCTTTATCCCAGGCAGAAACTTGAAGACAATTGGAGAAACCTTGGCGATATATTTGGCCGTAAGGGGAAGCAAGAGAAGGGGAGGGAATAA
AA sequence Show only first row Show all	>Lus10033426 pacid=23172047 polypeptide=Lus10033426 locus=Lus10033426.g ID=Lus10033426.BGIv1.0 annot-version=v1.0 MNSTLQLQLQLHPQPHLFCRNFPFPPPQFRLNHRRHRLKSLLLCTAFLEPFQTFLTQFPSSNSLDLLAPAIGLASGLTLYLNQIKSRNNPDRRASSDIGE WILFTTPTPFNRFVVLRCPSISFKGNELLEGVNEKLVEQDMHFVRLNSAGIQLNENGDGGSILDKLNYQRLCVSMEDGGVVSLDWPANLNFEDEHGLDTT LLLVPATPDGSTDHTVRSFVCEALRRGLFPIVMNPRGCAGSPLTTARLFSAADSDDISTVIQSINKARPWTTLVAVGWGYGANMLTKYLGEVGDSTPLTA ATCINNPFDLKEVNRSSPYHVALDQKLTAGLVDMLRANKGLFQGKAKGFDVDKALLAKSVRDFEEAISMVSYGSKDIEDFYSKSNTARLVNHVKVPVLFI QNDDDTVPLFSIPRSSIAENPCTNLLLCSCPPPGAKTNSRAALSLFQNLTMEWLTAVELGLLKGRHPLLTDLDVTINLSKGSTLSESAVVDIDGQRNDPL ALTVTNTNGNPIDLSNQLLESSSSEERLNSGSDKNCDSDLEIESGLQEAETQVVQKTSDTDLLEEESPNPADDENGEVLQSAQVVMNMLDVAMPGIVAED EKKKVLTAVNQGENLLKALEGAVPEEVREKLTTAASGIMQANRMKLKFDGLTGTRDIKLPSVSGLESNSQGESTSHSKPKVPPTDQMNMTNISTDANGDD QSGVQDSSGDPKPLPSDNLKKSVDSGQPRDMTDRQSDTLASSRAGMNESDHASDTATGESAGDKKPEASVESDTQGAGSGEEASTNDQESQKYDKSPAHL EMEKENNDGAKAVDPSSDQSKAASANASEEGILNPQSTGKEGNDDQKSDKNSEQPALEQNKPPISDPSPPNFDVVQALDAFTGMDDSTQVAVNSVFGVIE NMIDQLEEEKDNKDDVNDGNEVEDESNDPGSIEQKKFDQSAQAGNISSNAERVVNNYRSQEETPDQLFGDKSAVNCNSMTSDIPMLITKNSQNAYVDECL LDKVPRPKPLDLDKATALLVDYVPEDGQWKLLEQSVNDASVSNDVQGKDKDHLNAGVNSGSDFIVPSYVVLDAETRQESFNKKAENAPNTEDLIHFVKNI ILGALKVEVCRKLSVAELRKMKSDIGSDIELLANAVSLVVGNDKHQNFNEKNSTVNHTSEIADSIQAEKILEAISSSFLRTTYLRKILPVGVIVGCTLAA LRKHFYITTVPNDRLESYDQNNRALENYQGEIKTQKDDEKQRLGVPSLNPTRNKEGDGNVFKNMSNDSVMVGAVTAALGASALFGLQNENEIVEISAEYM NESGSSNMALDKLDDGMSTNDQNNAVASFAEKAMSVAGPVVPTKGDGEVDQDRLVSMLAGLGQRGGILRVVGKVALLWGGLRGAMSLTDRLISFLDIADR PFYQRILGFVGMALVLWSPVVIPLLPTLVQGWTTGTPSRFAELISILGLYAAILLLVMKWASKIRGYEHPLKQYGLDFTTLPKIKSFLAGLGGGVGLVLL MQSLNVCLGYASFSWPASHPPSANLIEDLKVYGKMILFSVQGTITATAVVLVEELLFRSWLPGEIAADLGYHRGIIISGLVFALAQRSPWAVPALWLLSL ALSGIRKRSQGSLSTVIGLRAGMVVSSFVLQSRGVLTYKDTLPLWLTGSHPFQPFSGIIGLAFSLFMAVLLYPRQKLEDNWRNLGDIFGRKGKQEKGRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10033426 [exp]	0	1
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	3.5	0.8704
AT4G03020			transducin family protein / WD...		Lus10033996 [exp]	5.5	0.8134
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	6.3	0.8148
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	6.3	0.8643
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	6.9	0.7688
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	9.3	0.8541
AT4G15840			BTB/POZ domain-containing prot...		Lus10002874 [exp]	12.8	0.7729
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10039971 [exp]	16.6	0.7249
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	17.7	0.8257
AT4G39420			unknown protein		Lus10006813 [exp]	20.0	0.8290

Compare expression of checked genes

Lus10033426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.