Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77410 1016 / 0 BGAL16 beta-galactosidase 16 (.1) AT5G63800 823 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT4G35010 746 / 0 BGAL11 beta-galactosidase 11 (.1) AT2G16730 742 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT3G13750 719 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 715 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT4G38590 712 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT2G28470 695 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 679 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 647 / 0 BGAL5 beta-galactosidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028538 [exp] 993 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 955 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10008259 [exp] 824 / 0 AT1G77410 908 / 0.0 beta-galactosidase 16 (.1) Lus10033502 [exp] 785 / 0 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10014126 [exp] 754 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 748 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10025980 [exp] 737 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10005071 [exp] 736 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027844 [exp] 734 / 0 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080700 [exp] 1035 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.005G180600 [exp] 1030 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 1012 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G069200 [exp] 879 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.004G174800 [exp] 787 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 785 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.005G232600 [exp] 732 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 731 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 717 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G099800 [exp] 715 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10033427 pacid=23172165 polypeptide=Lus10033427 locus=Lus10033427.g ID=Lus10033427.BGIv1.0 annot-version=v1.0 ATGGGGTTTTGGTGTATAATTATCATAGTTTGGGGACTGTTGGGGAGTGGAAGTGGAAATGAGGTACCAAATGGTAAAAATGTAAGTTACGATGGAAGGT CTTTGATCATTAATGACCACCACGAGCTCCTCTTCTCCGGTTCCATTCACTATCCTCGTAGTACTCCCCAAATGTGGCCATATTTAATAAAAAAAGCAAA AGAAGGAGGATTGGATGTGATCCAAACCTATGTGTTTTGGAACATACACGAGCCTCAACAAGGTCAGTTTGATTTCAGTGGAAGACATGATCTAATCAGG TTCATTAAGGAAGTCCAGTCACAAGGGCTCTATGTTTGCCTCAGGCTTGGCCCTTTCATTGAAGCTGAGTGGAACTATGGTGGTCTCCCGTTTTGGTTGC ATGATGTCCCAGACATTGTCTTTCGATCGGATAACAAACCATTCAAGAAACACATGCAGAGATATAGTGAAATGATAGTAGGAATGATGAAAAGGGAGAA TTTATATGCTTCACAAGGAGGGCCAATCATTCTCACACAGATCGAGAATGAGTACGGAACGTATGAAGGAGCATATAAAGAAGAGGGGAAAACATACATT CATTGGGCAGCCAAGATGGCTGTGAGCCTTGAAACTGGTGTGCCATGGATAATGTGCAAGCAGGATGATGCTCCTGACCCTGTGATTAACACATGCAATG GGATGAGATGTGGGGAGACATTTTCTGGCCCAAATTCACCTCATAAGCCTTCAATGTGGACAGAAAATTGGACAAGCTTCTACCAAACATATGGTGAAGA GGCTCCATTGAGATCAGCAGAAGACATAGCATACCAAGTTGCCCTTTTCATAGCAAAGAAAGGGTGTTATGTCAACTATTACATGTATCACGGAGGAACC AATTTTGGAAGAACATCGGCTAGGTACATGCTAACTGGCTACTATGATCAAGCTCCTCTCGACGAGTATGGCTTGCCTAGGGAACCAAAATGGAGCCATC TCAAGGAACTCCATGCTGCAATTAAGCTATGCAAGAAGCCTCTACTTTATGGGACTATGACAAACTTCACCCTAGGCCAATTTCAACAAGCTTATGTCTT CAAAGAAGAGCACTATTCATCAGGTAAATGTGCAGCATTTCTTGTGAACAGCCACAAAAGGCACAATGCAACAGTCTTCTTCAAAGATACATCCTACTTC TTGCCCAAAGAATCAATCACCATCCTTCCTGATTGCAACACAGTAGCCCTCAACACTGCTCAGGTAAATGCACAGTACAACACCAGATCAATGGAGACGA GGCAAAAGTTGAGTTCCTATAAGAAATGGGAGAAATATTCCGAACCAGTCCCTATGTTTGATGAGACAACATTAAGAGCACAGAATCTGTTGGAGCAAAT GAACACAACGAAAGATTCCTCTGACTATCTTTGGTACACTTTCAGGTTTGAGCGAGAGTCTACAAATACTCGATCCGTACTCAAGGTGGAAACACGTGGA CATGTTCTCCATGCTTTTGTGAACAACAAGTTAATAGGGTCTGCACACGGAAGTACCGAGACAAGCCATTTCACTTTGAAAGAAACGTTTGATTTGTCTA CTGAGCAAAATCACATATCTTTGCTTAGTGTAATGGTCGGATTACCGGATTCGGGTGCATTTCTTGAGAAGCAAGTTTCAGGATTGCGGGGACTAAAAGT GAATAACCGAAGCCTCGATCATCACCCATCGGGATATCAGGTTGGGTTAGTAGGTGAAAGATTGAAAGTATATACAAGCACTGGATCAAGAAATGTCCAA TGGGATCGGTACTCGAGCTCGGATCATCAACCACTCACTTGGTACAAGGCACACTTCATCACTCCACCCGGATATGAACCAGTAGCACTCAACCTTGGTT CGATGGGGAAAGGTGAAGCTTGGGTAAATGGGCAGAGAATAGGTCGATATTGGGTCTCATTTCTAACACCAAAAGATAAAGCCTCTCAACAATGGTATAA TGTGCCTCGATCATTCCTGAAACCTTCAGGGAAGAACTCATTAGTTCTACTAGAGGAAGAAACAAAGACAAACCCACTTGAAATATCTATAGATATTGTC GCCATCACGAAAGTTTGTGGCCATGTGTTGGATTTATACCCGCCAACCGCGACCTCCCTCCTACCTAAAGCGGAGGAGGGTGGAAAAAAGAGTAGGATAC GCAAAGTTCATCTTTCTTGCCACGAGGGTCAAAGAAGGATGATATCAAGAGTTTTGTTTGCAAGCTATGGGACTCCACTTGGGGATTGCGGGGGAAAATT CAATGGTACTATTGGGACTTGTCACTCACCAAATTCTGAATCTGTCGTGCAAAAGGCCTGTGTTGGAAAGGGAAATTGCTCAATCTTATTATCACCAATG GAATTTGGAGGAGACCCTTGTCTTGGAATTCCCAAGTCATTGCTAGTTGTTGCCCAATGCAATTAA
AA sequence Show only first row Show all	>Lus10033427 pacid=23172165 polypeptide=Lus10033427 locus=Lus10033427.g ID=Lus10033427.BGIv1.0 annot-version=v1.0 MGFWCIIIIVWGLLGSGSGNEVPNGKNVSYDGRSLIINDHHELLFSGSIHYPRSTPQMWPYLIKKAKEGGLDVIQTYVFWNIHEPQQGQFDFSGRHDLIR FIKEVQSQGLYVCLRLGPFIEAEWNYGGLPFWLHDVPDIVFRSDNKPFKKHMQRYSEMIVGMMKRENLYASQGGPIILTQIENEYGTYEGAYKEEGKTYI HWAAKMAVSLETGVPWIMCKQDDAPDPVINTCNGMRCGETFSGPNSPHKPSMWTENWTSFYQTYGEEAPLRSAEDIAYQVALFIAKKGCYVNYYMYHGGT NFGRTSARYMLTGYYDQAPLDEYGLPREPKWSHLKELHAAIKLCKKPLLYGTMTNFTLGQFQQAYVFKEEHYSSGKCAAFLVNSHKRHNATVFFKDTSYF LPKESITILPDCNTVALNTAQVNAQYNTRSMETRQKLSSYKKWEKYSEPVPMFDETTLRAQNLLEQMNTTKDSSDYLWYTFRFERESTNTRSVLKVETRG HVLHAFVNNKLIGSAHGSTETSHFTLKETFDLSTEQNHISLLSVMVGLPDSGAFLEKQVSGLRGLKVNNRSLDHHPSGYQVGLVGERLKVYTSTGSRNVQ WDRYSSSDHQPLTWYKAHFITPPGYEPVALNLGSMGKGEAWVNGQRIGRYWVSFLTPKDKASQQWYNVPRSFLKPSGKNSLVLLEEETKTNPLEISIDIV AITKVCGHVLDLYPPTATSLLPKAEEGGKKSRIRKVHLSCHEGQRRMISRVLFASYGTPLGDCGGKFNGTIGTCHSPNSESVVQKACVGKGNCSILLSPM EFGGDPCLGIPKSLLVVAQCN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10033427 [exp]	0	1
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10035525 [exp]	1.0	0.9995
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	2.4	0.9961
					Lus10003755 [exp]	3.0	0.9916
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	4.5	0.9895
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	5.0	0.9546
					Lus10038295 [exp]	8.9	0.9714
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	9.5	0.9710
					Lus10030912 [exp]	9.7	0.9876
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	10.7	0.9874
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019196 [exp]	11.5	0.9839

Compare expression of checked genes

Lus10033427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.