Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60360 561 / 0 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT3G45310 558 / 0 Cysteine proteinases superfamily protein (.1.2) AT1G47128 230 / 1e-71 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 228 / 1e-70 Granulin repeat cysteine protease family protein (.1) AT1G09850 219 / 1e-67 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G36880 217 / 1e-67 CP1 cysteine proteinase1 (.1) AT3G48340 214 / 1e-66 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT1G06260 214 / 1e-66 Cysteine proteinases superfamily protein (.1) AT5G50260 213 / 2e-66 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT4G39090 213 / 5e-66 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034895 [exp] 639 / 0 AT3G45310 524 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10014087 [exp] 227 / 5e-70 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 224 / 5e-69 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002184 [exp] 219 / 8e-69 AT1G06260 384 / 1e-133 Cysteine proteinases superfamily protein (.1) Lus10032406 [exp] 218 / 2e-68 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020734 [exp] 218 / 2e-68 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 218 / 2e-68 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 218 / 2e-68 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 218 / 3e-68 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141700 [exp] 566 / 0 AT3G45310 590 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G232900 [exp] 224 / 9e-70 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.014G024100 [exp] 223 / 6e-69 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.004G207600 [exp] 217 / 6e-68 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.007G076000 [exp] 216 / 1e-67 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 216 / 3e-67 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 216 / 3e-67 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 216 / 3e-67 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.004G056366 [exp] 215 / 3e-67 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 214 / 9e-67 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10033428 pacid=23172225 polypeptide=Lus10033428 locus=Lus10033428.g ID=Lus10033428.BGIv1.0 annot-version=v1.0 ATGGCTCGCCCAGCCTTGATCCTCTCCGTCCTTCTCCTCCTCATCTGCTGCGCCGCCGCCGTAGCCTTAGACGACGAGTCGAATCCCATCCGGATGGTCT CCGATCGTCTCAGCGAATTGGAAGCTTCTGTTGTCAAAGTCGTCGGCAACACTCGTTTGGCACTTAAATTTGCCCGATTTGCTCACAGGCATGAGAAGAA GTATGAGATGGAGGAGGAGATAAGGCAGCGGTTCTCCATCTTCAAGGAGAATTATGATTTAATCAGATCCACCAACAAAAAGGGATTGTCTTACACACTT GGTGTTAATTATTATGCTGATTGGACATGGGAAGAATTCCAAATGAAAAAGCTAGGAGCTGCACAAAACTGCTCTGCCACCAGGAGGGGCAATTTAATGA TAACCGATGCTATCCTCCCGGAAAAGAAAGACTGGAGGGATGAAGGAATTGTGAGCCCAGTTAAGAATCAAGGTGGGTGTGGATCTTGCTGGACATTCAG CACGACTGGAGCTCTTGAAGCAGCTTATGCCCAAGCTTTCGGGAAAGGAATATCTTTGTCTGAGCAGCAGCTTGTAGACTGTGCTGGGTCTTTTAATAAC TATGGCTGCAATGGTGGACTCCCATCCCAAGCTTTTGAATACATAAAATACAATGGAGGTCTGGAAACCGAGGAAGCATACCCTTACACAGGAAAGAATG GGTTGTGCAAATACTCAGCACAGAATATTGGTGTCCAAGTTTTGGACTCCGTAAACATCACCCTGGGAGCCGAAGATGAGCTGAAGCAAGCAGTAGGGTT GGTTCGTCCAGTAAGTGTGGCATTCCAGGTGGTGTCTGATTTCCGATTATACAAGAGTGGGGTTTACACCAGTGACACCTGTGGAAGTACTTCCATGGAT GTGAACCACGCTGTGCTGGCTGTGGGATACGGAGTTGAAAATAGTGTTCCATATTGGCTCATCAAGAACTCCTGGGGAGGAGATTGGGGCGACAGTGGCT ATTTCAAGATGGAAATGGGGAAGAACATGTGTGGTGTTGCAACATGTGCTTCGTATCCGGTTGTTGCCTAA
AA sequence Show only first row Show all	>Lus10033428 pacid=23172225 polypeptide=Lus10033428 locus=Lus10033428.g ID=Lus10033428.BGIv1.0 annot-version=v1.0 MARPALILSVLLLLICCAAAVALDDESNPIRMVSDRLSELEASVVKVVGNTRLALKFARFAHRHEKKYEMEEEIRQRFSIFKENYDLIRSTNKKGLSYTL GVNYYADWTWEEFQMKKLGAAQNCSATRRGNLMITDAILPEKKDWRDEGIVSPVKNQGGCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGSFNN YGCNGGLPSQAFEYIKYNGGLETEEAYPYTGKNGLCKYSAQNIGVQVLDSVNITLGAEDELKQAVGLVRPVSVAFQVVSDFRLYKSGVYTSDTCGSTSMD VNHAVLAVGYGVENSVPYWLIKNSWGGDWGDSGYFKMEMGKNMCGVATCASYPVVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	0	1
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	1.0	0.9627
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	2.0	0.9365
AT4G31410			Protein of unknown function (D...		Lus10020151 [exp]	2.2	0.9198
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	3.0	0.9172
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	3.5	0.9197
AT1G03250			unknown protein		Lus10012370 [exp]	4.5	0.9172
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	5.3	0.9158
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	5.7	0.9241
AT1G04555			unknown protein		Lus10014458 [exp]	6.0	0.9301
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	6.9	0.9180

Compare expression of checked genes

Lus10033428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.