Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 586 / 0 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G35580 531 / 0 Protein kinase superfamily protein (.1) AT2G26290 456 / 4e-158 ARSK1 root-specific kinase 1 (.1) AT1G72540 456 / 2e-157 Protein kinase superfamily protein (.1) AT5G01020 446 / 2e-154 Protein kinase superfamily protein (.1) AT1G61590 444 / 4e-153 Protein kinase superfamily protein (.1) AT2G07180 401 / 4e-136 Protein kinase superfamily protein (.1.2) AT3G28690 396 / 3e-135 Protein kinase superfamily protein (.1.2.3) AT5G15080 399 / 9e-135 Protein kinase superfamily protein (.1) AT5G56460 389 / 9e-132 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034897 [exp] 820 / 0 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 503 / 8e-176 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 501 / 3e-175 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 487 / 1e-169 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 486 / 4e-169 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 441 / 5e-153 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 443 / 1e-152 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 441 / 2e-151 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 403 / 4e-136 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141500 [exp] 601 / 0 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 517 / 0 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 509 / 2e-178 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 505 / 8e-177 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 466 / 8e-162 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 454 / 2e-157 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 454 / 4e-157 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 448 / 7e-155 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 404 / 6e-137 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 404 / 1e-136 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10033429 pacid=23172054 polypeptide=Lus10033429 locus=Lus10033429.g ID=Lus10033429.BGIv1.0 annot-version=v1.0 ATGGCAACGGCGGAGAAATCTGGATGGGCTTCATTCTTCTCGAGCTGCTTCGGTTCGGAACCGGGCCAAACCAGTGTTAACCATAATGGGAAGAAAGACA AGAAGAGGAAAAAGCGGTCCAGCTCATCGTCCACGTCATCACCCAAGGCAAAGAACAAACAGGGGATGATGGCGATGACGAGGCAGGGTTCGTTTCAAGG ACGGTTATCGATATCAGATCTGAGCAATCCTAGCTCATCGCTGCTTTCAGAAGATCTGTCCATCTCCCTTGCCGGCTCAAACCTCCACGTCTTCACCTTG GCTGAGCTTAAGATCATCACCCAGAGCTTCTCCTCCGGCAACTTCCTTGGTGAAGGTGGCTTCGGCCCTGTCCACAAGGGTTTCATCGACGACAAGCTCC GACCTGGCGTCTTGAAAGCGCAGCCCGTCGCCGTTAAGCTCCTCGACCTCGAGGGTCTCCAGGGCCACCGCGAGTGGTTGACGGAAGTCATATTCCTTGG ACAGCTAAGACACCCTCATCTCGTCAAGCTCATCGGATACTGCTGCGAAGAGGAACATAGGCTGCTGGTTTATGAGTACATGCCACGTGGTAGCCTCGAG CATCATCTCTTCCGACGATATTCAGCATCGCTACCGTGGTCAACGAGGATGAAAATAGCTGAAGGAGCTGCAATGGGACTTCAATTCCTCCACGAATCGA AAAAGCCAGTCATATACAGAGACTTCAAAGCATCCAACATTCTCTTGGACTCCGACTTCACCGCCAAACTGTCCGATTTCGGGCTGGCTAAAGACGGGCC GGAAGGATCCGACACCCATATTTCGACCCGGGTGATGGGGACCCACGGATACGCTGCACCGGAATACATAATGACAGGCCATCTCACATCAATGAGCGAC GTATACAGCTTCGGAGTCGTGTTACTAGAGCTCTTGTCGGGAAGGAGATCGGTGGACAAGGCTCGTCCACCCAGGGAGCAGAATTTGGTAGAATGGGCCA GGCCCATGTTGAACGACCCGAGGAAATTGAGCCGGATAATGGACCCGAGGCTTGAGGGTCAATACTCGGAGACCGGTGCTCGGAAGGCGGCCGCACTGGC TTACCAGTGTTTGAGCCACCGCCCTAAACATAGGCCCACCATGAGCATGGTTGTGAGAACGCTGGCCCCACTCAAGGACTATAATGATTTCGCTATGGGT ACTTTCGTCTATGTGGTACCCACCACCACTGCGGAAAACAAAAAGGAATTAGGTGGTGAAGAGAAGGTTCCGGCGGAAAGTGAAGAAGTCAAAGTAAAGG CAGCTAAGAAGAAGGAACGAGGAAGCAGCTTGCAGCAGGGTGGTGGTGATAATAATGTAAATGTTGTTGGCCAGCAGCAATATCATCATAAACATAAGCT TCACCACGGTGGTGACGGCGAGAGGAAGCATCACCGGAGTTCTCCTAGATCGCCGACTGTTCACTCCGATGCTGGGTATCGACACAGTCCCAGATCAAAT AGATTGAACTCTCCTTTACATCCAAAAGCCAATGGTGCCTGA
AA sequence Show only first row Show all	>Lus10033429 pacid=23172054 polypeptide=Lus10033429 locus=Lus10033429.g ID=Lus10033429.BGIv1.0 annot-version=v1.0 MATAEKSGWASFFSSCFGSEPGQTSVNHNGKKDKKRKKRSSSSSTSSPKAKNKQGMMAMTRQGSFQGRLSISDLSNPSSSLLSEDLSISLAGSNLHVFTL AELKIITQSFSSGNFLGEGGFGPVHKGFIDDKLRPGVLKAQPVAVKLLDLEGLQGHREWLTEVIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMPRGSLE HHLFRRYSASLPWSTRMKIAEGAAMGLQFLHESKKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGSDTHISTRVMGTHGYAAPEYIMTGHLTSMSD VYSFGVVLLELLSGRRSVDKARPPREQNLVEWARPMLNDPRKLSRIMDPRLEGQYSETGARKAAALAYQCLSHRPKHRPTMSMVVRTLAPLKDYNDFAMG TFVYVVPTTTAENKKELGGEEKVPAESEEVKVKAAKKKERGSSLQQGGGDNNVNVVGQQQYHHKHKLHHGGDGERKHHRSSPRSPTVHSDAGYRHSPRSN RLNSPLHPKANGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	3.3	0.9408
AT1G45063			copper ion binding;electron ca...		Lus10038098 [exp]	4.9	0.9341
AT3G19615			unknown protein		Lus10042265 [exp]	8.3	0.9268
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	9.9	0.8881
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	11.5	0.8947
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10040179 [exp]	16.7	0.9190
AT1G04700			PB1 domain-containing protein ...		Lus10003184 [exp]	17.8	0.8762
AT5G25930			Protein kinase family protein ...		Lus10006028 [exp]	18.5	0.8754
AT4G30230			unknown protein		Lus10041416 [exp]	18.6	0.9003
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	22.7	0.9027

Compare expression of checked genes

Lus10033429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.