Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05920 1067 / 0 Subtilase family protein (.1) AT5G67360 810 / 0 ARA12 Subtilase family protein (.1) AT3G14067 755 / 0 Subtilase family protein (.1) AT5G51750 732 / 0 ATSBT1.3 subtilase 1.3 (.1) AT4G34980 723 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 723 / 0 Subtilase family protein (.1) AT1G04110 653 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 581 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 566 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 549 / 0 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034900 [exp] 1436 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 769 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 764 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 758 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 746 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 711 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 703 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 688 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 645 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141200 [exp] 1187 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 763 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 759 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.002G120400 [exp] 755 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 755 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 745 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 744 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 739 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.005G145300 [exp] 731 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.009G133400 [exp] 727 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10033431 pacid=23172180 polypeptide=Lus10033431 locus=Lus10033431.g ID=Lus10033431.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAGTCCTGCAAATGCCTGTTACAGCTTCTACTTCTTCTTTCAACAGTCTCGCTTTCCGCCATTGCTAAGCAGACTTACATTGTCCACATTA AGCACAATTCCAAGCCCCAATCCTTCGCCACCCACCGAGACTGGTACTCTGCTAGCCTCCTCTCCGTCGATGCCGCCGATCCTTCTCTTCTCTACACCTA TGATGCCGCATTTCACGGATTCGCCGCCTCTCTCGAACCGGAGCAAGCCGATGCACTACGGAAGTCCGATTACGTCGTCGATGTGTACGAAGAGACGGTC TACTCTCTCCACACCACGCGTACTCCTCAGTTCCTCGGCATCAATGACAACTTCGGCTTGTTCGACGGCCGCCGGTTTTTTGATGTCGATCAGGCTTCTA ATTACGATGTCGTCGTCGGAGTCCTAGACACGGGAGTCTGGCCGGAGTCCAAAAGCTACGATGATTCCGGTATGCCCGAGATCCCAGCCCGGTGGAAAGG CACGTGTGAGTCCGGGCCGGATTTCAGCCCCAAACTCTGCAACAAGAAGCTTATCGGCGCCCGTTACTTTTCCAAAGGATTCCACATGGCTTCCGGCGGA AGCTTCGCTAAGCGTCCTACCATCAAAGAGGAGGAATCCCCACGCGACAGAGATGGTCACGGTACGCACACCTCCAGTACTGCTGCAGGTTCCATGGTGG CTAACGCAAGCTTGCTAGGCTACGCCAGCGGCACGGCGCGTGGGATGGCTACGCATGCGCGCGTGGCGGCTTACAAGGTGTGCTGGAGTTCCGGTTGCTT CGGATCTGACATCCTCGCTGGTATGGATAGGGCGATTCAGGACGGCGTTGACGTTCTTTCTCTCTCCCTCGGTGGAGGATCCGCTCCGTATTACCGTGAT ACCATCGCTATTGGGGCGTTCAGCGCGATGGAGAGGGGTATTTTCGTCTCTTGCTCCGCTGGTAACAGTGGGCCCACGAGGGCTAGTCTTGCCAACGTGG CTCCATGGATTATGACGGTCGGGGCCGGGACGCTGGATCGGGATTTCCCTGCTTTTGCGATTCTGGGTAACGGGAAGCGGTTCACCGGCGTATCGCTCTA CAGCGGAGCCGGAATGGGTAAGAAACTAGTGAGTTTGGTTTATAGCAAGGGAAGAAACAGTTCGAGCAATTTATGTCTGCCCGGTTCGCTCGAACCGGCG TTGGTTAAGGGGAAAGTGGTGATTTGCGATAGGGGAATAAACGCGCGCGTGGAGAAAGGTGCAGTTGTGCGGGACGCAGGTGGGATGGGGATGATACTAG CGAATACAGCTGCGAGCGGAGAGGAATTAGTTGCCGATAGTCACTTGTTGCCGGCGGTGGCGGTGGGGAGGAAACTGGGTGATGTAATAAAGGAGTACGC GAAGAGCGTTCCAAATCCAAAAGCGGTGTTGAGCTTCGGAGGAACGGAGGTGAATGTGAAGCCGTCGCCGGTGGTGGCAGCATTCAGCTCAAGGGGGCCG AATATGGTGACAGCGCAGATTTTGAAGCCGGATCTGATTGGCCCCGGTGTGAACATCTTAGCGGCGTGGTCGGAGGCTATTGGACCCACAGGCTTAGACA AGGATTCCAGAAAGACAGAATTCAACATTATGTCAGGTACATCAATGTCGTGCCCGCATATCAGCGGTGTGGCTGCATTGCTTAAAGCTGCTCACCCTAC CTGGAGCCCAAGTGCGATTAAATCTGCACTCATGACAACTTCCTATGTTGTTGACAACACCAACTCCCCTCTCAAGGATGCTACCGATGGGTTGCTTTCA ACCCCATGGGCTCACGGTTCAGGTCACGTGGACCCTCATAAGGCTCTATCTCCGGGCCTTGTCTACGACATCTCCACCGAGGAGTACATTGCATTCTTGT GTTCCCTAGAATACACAATCGACCGTGTCCAGGCCATTGTGAAGCGTCCTAACATCACTTGTTCGAGGAAGTTCAAGGACCCCGGCAGCCTCAACTATCC GTCCTTCTCAGTTGTTTTTGCTAGAACCAGGGTCATCCGGTACACCCGGGAGCTCACTAATGTGGGCGCTGCCGATTCTGCATACGAGGTGGTTGTAACC ACTCCTCGATCGGTGACTGCAACAGTGAAGCCTACCAAGCTTGTTTTCAAGAAAGTTGGGGACAAGTTGAGGTACACGGTGACTTTTGTTTCCAAGAACA GAGGAGGGAATGCAATGTCGGAGTTTGGTTCTATAGTTTGGAAAAATGTTGCGCACCAAGTGAGGAGCCCGGTTGCATTTTCATGGTCTGAGTTATAA
AA sequence Show only first row Show all	>Lus10033431 pacid=23172180 polypeptide=Lus10033431 locus=Lus10033431.g ID=Lus10033431.BGIv1.0 annot-version=v1.0 MASKSCKCLLQLLLLLSTVSLSAIAKQTYIVHIKHNSKPQSFATHRDWYSASLLSVDAADPSLLYTYDAAFHGFAASLEPEQADALRKSDYVVDVYEETV YSLHTTRTPQFLGINDNFGLFDGRRFFDVDQASNYDVVVGVLDTGVWPESKSYDDSGMPEIPARWKGTCESGPDFSPKLCNKKLIGARYFSKGFHMASGG SFAKRPTIKEEESPRDRDGHGTHTSSTAAGSMVANASLLGYASGTARGMATHARVAAYKVCWSSGCFGSDILAGMDRAIQDGVDVLSLSLGGGSAPYYRD TIAIGAFSAMERGIFVSCSAGNSGPTRASLANVAPWIMTVGAGTLDRDFPAFAILGNGKRFTGVSLYSGAGMGKKLVSLVYSKGRNSSSNLCLPGSLEPA LVKGKVVICDRGINARVEKGAVVRDAGGMGMILANTAASGEELVADSHLLPAVAVGRKLGDVIKEYAKSVPNPKAVLSFGGTEVNVKPSPVVAAFSSRGP NMVTAQILKPDLIGPGVNILAAWSEAIGPTGLDKDSRKTEFNIMSGTSMSCPHISGVAALLKAAHPTWSPSAIKSALMTTSYVVDNTNSPLKDATDGLLS TPWAHGSGHVDPHKALSPGLVYDISTEEYIAFLCSLEYTIDRVQAIVKRPNITCSRKFKDPGSLNYPSFSVVFARTRVIRYTRELTNVGAADSAYEVVVT TPRSVTATVKPTKLVFKKVGDKLRYTVTFVSKNRGGNAMSEFGSIVWKNVAHQVRSPVAFSWSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	0	1
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10021430 [exp]	1.4	0.9398
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	4.7	0.9024
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	4.9	0.9245
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	6.0	0.9081
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	6.7	0.8934
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	7.1	0.9117
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	7.5	0.9038
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	8.8	0.9042
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	9.9	0.9034
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	11.5	0.9040

Compare expression of checked genes

Lus10033431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.