Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05910 221 / 5e-74 Protein of unknown function (DUF567) (.1) AT5G20640 192 / 4e-62 Protein of unknown function (DUF567) (.1) AT3G10986 69 / 2e-14 Protein of unknown function (DUF567) (.1) AT3G15810 68 / 6e-14 Protein of unknown function (DUF567) (.1) AT5G01750 60 / 5e-11 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G80120 59 / 8e-11 Protein of unknown function (DUF567) (.1) AT3G11740 56 / 1e-09 Protein of unknown function (DUF567) (.1) AT3G56180 54 / 8e-09 Protein of unknown function (DUF567) (.1) AT2G14560 50 / 2e-07 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 42 / 0.0001 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033433 [exp] 406 / 1e-146 AT2G05910 221 / 9e-74 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 67 / 2e-13 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10002477 [exp] 63 / 5e-12 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 63 / 5e-12 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 56 / 2e-09 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 55 / 3e-09 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10007423 [exp] 55 / 4e-09 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 53 / 2e-08 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10014021 [exp] 52 / 3e-08 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140900 [exp] 292 / 4e-101 AT2G05910 245 / 8e-83 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 71 / 6e-15 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 70 / 9e-15 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 64 / 2e-12 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 64 / 2e-12 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 64 / 3e-12 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 61 / 2e-11 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.008G075100 [exp] 60 / 5e-11 AT3G56180 177 / 2e-56 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 59 / 1e-10 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.010G182300 [exp] 59 / 1e-10 AT3G56180 201 / 5e-66 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10033432 pacid=23172253 polypeptide=Lus10033432 locus=Lus10033432.g ID=Lus10033432.BGIv1.0 annot-version=v1.0 ATGGCGCCGGCGGTGGCTATAATAAGTAAGATGTATTGTTCGCCGTCACAGGTGATACTGACGGTGCGGAAAAGACCTCACGCCGTCAGCGGGGGAGGGT TTGTGGTGACTGATTGTAGCCAGAAGGTTGTTTTCAGAGTGGAAGGCTGCGGAGTTCTTGGCTCCCATGGTGAGCTTATGCTCCGTGACGCCCTTGGAGA TGCCTTACTTCTCATTCGTCGCAAGGAAGGGGTGGTACAAGCGGTAAGCATAAACAGGAAATGGAAAGGATACAGTTTCGACTACGAAGGGATAAAGAAG ATGGTATTCAAGCTCAAAGAGCCCAATTATTCATGCTTGTTGTCCAAGAAGAATCAAAGTTCCATCAGGATTTCGACAGAGCCAAGGAGGTCCAACACAA GCGATTGGGATTTCGAGGTGCAAGGCCACTTCCCTGACAAAGACGCGTCTATCGTTGACCACTTGGGTCGTGTTATTGCTCAGATTGGTGTTGAGAAAGG AATGACGAGCATGGATCTCTACTACGTGGTCGTCAACCCTGGGATTGATCAGGCTTTCGTCTTCGGAGTCATTGCGGTTTTGGACAACGTTCACGGCGAA TCCACCACTTGCTAG
AA sequence Show only first row Show all	>Lus10033432 pacid=23172253 polypeptide=Lus10033432 locus=Lus10033432.g ID=Lus10033432.BGIv1.0 annot-version=v1.0 MAPAVAIISKMYCSPSQVILTVRKRPHAVSGGGFVVTDCSQKVVFRVEGCGVLGSHGELMLRDALGDALLLIRRKEGVVQAVSINRKWKGYSFDYEGIKK MVFKLKEPNYSCLLSKKNQSSIRISTEPRRSNTSDWDFEVQGHFPDKDASIVDHLGRVIAQIGVEKGMTSMDLYYVVVNPGIDQAFVFGVIAVLDNVHGE STTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	0	1
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	1.0	0.9799
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	2.0	0.9781
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	2.4	0.9724
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	3.5	0.9770
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	4.2	0.9635
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	6.5	0.9622
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	7.1	0.9647
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	9.2	0.9769
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	9.5	0.9758
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	10.0	0.9628

Compare expression of checked genes

Lus10033432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.