Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05910 221 / 9e-74 Protein of unknown function (DUF567) (.1) AT5G20640 190 / 4e-61 Protein of unknown function (DUF567) (.1) AT3G15810 64 / 2e-12 Protein of unknown function (DUF567) (.1) AT1G80120 63 / 3e-12 Protein of unknown function (DUF567) (.1) AT5G01750 60 / 6e-11 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 58 / 3e-10 Protein of unknown function (DUF567) (.1) AT2G14560 47 / 3e-06 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT2G38640 40 / 0.0006 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033432 [exp] 406 / 1e-146 AT2G05910 221 / 5e-74 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 65 / 1e-12 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10002477 [exp] 63 / 5e-12 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 63 / 5e-12 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10016666 [exp] 60 / 9e-11 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 59 / 1e-10 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10014154 [exp] 56 / 3e-09 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 55 / 5e-09 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10010681 [exp] 53 / 2e-08 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140900 [exp] 288 / 1e-99 AT2G05910 245 / 8e-83 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 72 / 2e-15 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 69 / 4e-14 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 66 / 3e-13 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 63 / 4e-12 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 62 / 7e-12 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.016G130700 [exp] 61 / 3e-11 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.006G067000 [exp] 59 / 8e-11 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.016G130500 [exp] 59 / 2e-10 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 58 / 2e-10 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10033433 pacid=23172103 polypeptide=Lus10033433 locus=Lus10033433.g ID=Lus10033433.BGIv1.0 annot-version=v1.0 ATGGCGCCGGTGGTGGCTATCATAAGTAAGATGTATTGTTCGCCGTCACAGGTGGTACTGACGGTGAGGAAAAGGCCTCACGCCGTCAGCGGCGGAGGGT TTGTGGTGACTGATTGTAGTCAGAAGGTTGTTTTCAGAGTGGAAGGCTGCTGTGTTCTTGGTTCCCATGGAGAGCTTATGCTCCGTGACGCCCATGGAGA TGCCTTACTTCTCATTCGTCGCAAGGAAGGGGTGGTGCAAGCGGTAAGCATAAACAGGAAATGGAAAGGATACAGTTTCGACTACGAAGGGATAAAGAAG ATGGTATTCAAGCTCAAGGAGCCCAATTATTCGTGCTTGTTGTCCAAGAAGAACCAAGGTTCCATTAGGATATCGACAGAGCCAAGGAGGTCTAACACAG GCGATTGGGATTTCGAGGTGCAAGGCCACTTCCCTGACAAAGACGCGTCTATCGTTGACCACTTAGGTCGGGTTATCGCTCAGATTGGTGTCGAGAAAGG GATGACGAGCATGGATCTCTACTACGTTGTGGTCAAGCCTGGGATTGATCAGGCTTTCGTCTTCGGAGTCATTGCCGTTCTGGACAACGTTCACGGCGAG TCCACCACTTGCTAG
AA sequence Show only first row Show all	>Lus10033433 pacid=23172103 polypeptide=Lus10033433 locus=Lus10033433.g ID=Lus10033433.BGIv1.0 annot-version=v1.0 MAPVVAIISKMYCSPSQVVLTVRKRPHAVSGGGFVVTDCSQKVVFRVEGCCVLGSHGELMLRDAHGDALLLIRRKEGVVQAVSINRKWKGYSFDYEGIKK MVFKLKEPNYSCLLSKKNQGSIRISTEPRRSNTGDWDFEVQGHFPDKDASIVDHLGRVIAQIGVEKGMTSMDLYYVVVKPGIDQAFVFGVIAVLDNVHGE STTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05910			Protein of unknown function (D...		Lus10033433 [exp]	0	1
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10034437 [exp]	2.6	0.8852
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10035175 [exp]	6.3	0.8837
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	8.2	0.8880
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	9.7	0.8872
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	11.6	0.8792
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	11.9	0.9008
AT1G55265			Protein of unknown function, D...		Lus10039182 [exp]	12.7	0.8559
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	14.3	0.8488
AT2G27180			unknown protein		Lus10013375 [exp]	19.6	0.8919
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10008898 [exp]	25.5	0.8913

Compare expression of checked genes

Lus10033433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.