Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06510 425 / 1e-146 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G45400 359 / 2e-118 ATRPA70C Replication factor-A protein 1-related (.1) AT4G19130 355 / 3e-117 Replication factor-A protein 1-related (.1) AT5G61000 166 / 1e-46 ATRPA70D Replication factor-A protein 1-related (.1) AT5G08020 162 / 2e-45 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023805 [exp] 336 / 3e-109 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 330 / 3e-107 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10033272 [exp] 285 / 6e-91 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1) Lus10034737 [exp] 271 / 1e-87 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033436 [exp] 209 / 6e-64 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10040517 [exp] 164 / 3e-46 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 161 / 3e-45 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 163 / 5e-45 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003268 [exp] 121 / 2e-31 AT5G08020 282 / 2e-89 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065300 [exp] 456 / 4e-158 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.003G102700 [exp] 371 / 8e-123 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.015G057300 [exp] 154 / 2e-42 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.001G165480 [exp] 44 / 5e-05 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.019G061550 [exp] 42 / 0.0003 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033435 pacid=23172138 polypeptide=Lus10033435 locus=Lus10033435.g ID=Lus10033435.BGIv1.0 annot-version=v1.0 ATGGAGACTCAGCGAAGAACGGTGAATGTGAAGGATAGTTCAGGCAGAAGTGTTGAGCTAACTCTTTGGGGAGATTTCTGTAACAAAGAAGGTCAAGGTC TGCAAGAGATGGTGGATTCGGGGATATTTCCAGTACTAGCTGTGAAAGCAGGAAAGGTTAGTGATTTCACTGGGAAGTCTGTAGGGACGATTTCATCTTC TCAGCTATTCATAAATCCAGAAATTCCTGAAGCACAAGAGCTGAGAGACTGGTTTAACCGAGGAGGGCGGAACGCTGCTACTGTATGCATTTCCAAGGAC GTGGTGCCAGCAGGATCCAAGAATGAAATAAGGAAAACTGTGTCCCAAATCAAAGACGAAGGTCTTGGACGATCGGAGAAACCAGACTGGGTAACTGTGA AAGCTGCAATCACCTTTTTCAAAATAGAATCGTTCTGCTACACAGCTTGTCCGCTGATGATAGGGGATAGACAGTGTAACAAGAAGGTGAACAGATCAGG AAGCTCGGGATGGGTATGCGATAGATGCAATCAAGAATTCGAGGAATGTGATTACAGATATCTGCTTCAGTTTCAGATTCAGGACCATACAGGATTAGCG TGGGTTACAGCTTTCCAAGAGTCGGGAGAAGAGATCATGGGAATACCAGCCAAGGAGTTGTACGAACTGAAAAACAACGAGCAGGAGGAGTCTAGACTTT CAAACATATTTCGCAGCAGGGTGTTTTACCGTTATCTTTTGAGGCTTAAGATCAAGGAGGAAATGTATGGCGATGAACTGAGGGTTAAGATCACGGTGGT GAAGGCAGACAAGATTGATTACTCTTCTGAGAGCAGACAAATGCTTGGCGAAATTGTTTCCGGATCCCGTAGGTACTGA
AA sequence Show only first row Show all	>Lus10033435 pacid=23172138 polypeptide=Lus10033435 locus=Lus10033435.g ID=Lus10033435.BGIv1.0 annot-version=v1.0 METQRRTVNVKDSSGRSVELTLWGDFCNKEGQGLQEMVDSGIFPVLAVKAGKVSDFTGKSVGTISSSQLFINPEIPEAQELRDWFNRGGRNAATVCISKD VVPAGSKNEIRKTVSQIKDEGLGRSEKPDWVTVKAAITFFKIESFCYTACPLMIGDRQCNKKVNRSGSSGWVCDRCNQEFEECDYRYLLQFQIQDHTGLA WVTAFQESGEEIMGIPAKELYELKNNEQEESRLSNIFRSRVFYRYLLRLKIKEEMYGDELRVKITVVKADKIDYSSESRQMLGEIVSGSRRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033435 [exp]	0	1
AT1G67660			Restriction endonuclease, type...		Lus10011377 [exp]	10.1	0.7386
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012007 [exp]	17.7	0.7040
AT1G10522			unknown protein		Lus10030834 [exp]	42.0	0.6479
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	43.4	0.7004
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	53.9	0.6984
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020387 [exp]	61.8	0.6582
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10003138 [exp]	89.1	0.6627
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	101.1	0.6306
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	112.7	0.6591
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10018505 [exp]	117.6	0.6310

Compare expression of checked genes

Lus10033435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.