Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06510 561 / 0 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT4G19130 387 / 8e-127 Replication factor-A protein 1-related (.1) AT5G45400 360 / 2e-115 ATRPA70C Replication factor-A protein 1-related (.1) AT5G08020 180 / 6e-50 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 174 / 1e-47 ATRPA70D Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023805 [exp] 444 / 1e-147 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 414 / 4e-136 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10034737 [exp] 268 / 2e-83 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033435 [exp] 209 / 8e-64 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10040517 [exp] 179 / 2e-49 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 182 / 3e-49 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 170 / 4e-46 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10033272 [exp] 125 / 3e-30 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1) Lus10003268 [exp] 82 / 1e-16 AT5G08020 282 / 2e-89 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065300 [exp] 654 / 0 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.003G102700 [exp] 461 / 3e-154 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.015G057300 [exp] 184 / 4e-51 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.019G061550 [exp] 52 / 6e-07 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004401 [exp] 45 / 4e-05 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10033436 pacid=23172206 polypeptide=Lus10033436 locus=Lus10033436.g ID=Lus10033436.BGIv1.0 annot-version=v1.0 ATGCCGGTCAATCTCACCCCCAACGCTATAGCCGCCATCATTGCCGGCGATCTGAACTCGAAGCCGCTGGTACAGGTTACGGACATCAAACTGTGCGGGA GCGCTCAGGAAAGGTACAGGATGATGATCTCCGATTCCGTCTCCACTCAGCAAGCGATGCTCGCTACTCAGCTCAATGATAGAGTCAAGACCGGCTGCGT CAAGATAGGATCCGTCGTCCAGCTCATTGATTACATTTGCAGCGATGTCCAGAACCGCAGGATTATCGTCGTGCTGAAAATGGAAACTATAGTACTGGAT TGTGGAATAATTGGAAATCCTAAATGCGTGGCTGATATGACTGCTCAGAAGACCCTTACTAACGTCAGTTCAGCACAATCAGGCAGCGGATTTTACAACG ATTCGAGTTCCCTAAACAATGGTGGTAATATGCAAAGTTTTCGGCCAGCTTTCAATGCCCAAAATGCTGGAAACAATATGCAGGGCCTGCAGCCTACCTC TTTCCCCCAAAATCAAGGAACCAATGTGAAAGGTACTCGGCCTCTGTTGAATAATGCCCGAAATGGCAGCAATGGTATGATGAGACCAGCTACTTGGAAT AATGCACAGAGTTATGGACCATCCGTTCAACCTGCATACCAACCGCCTCCGAGTTATATAAATAGAGGAGCAATCATGAAGAACGAAGCACCAGCTAGAG TAATTCCAATTGCTGCTTTGAATCCTTACCAGGGAAGGTGGGCCATCAAGGCCCGGGTAACTGCGAAAGGAGATCTCCGTCGCTACAACAATGCACGTCG TTACAACAATGCACGTGGAGATGGGAAGGTCTTCTCCTTTGACCTTCTTGATTCAGATGGAGGTGAAATAAGGGTAACATGCTTCAATTCTGTTGTTGAC CGCTTCTATGATGTCATTGAGGTTGGAAGAGTCTATTTGATCGCAAAGGGTAATTTAAAACCAGCACAGAAAAATTTCAATCATCTGAAGAATGAGTGGG AGATATTTCTTGAGGCAGCTTCAACTGTCGATCTTCTTCCAGAGGAAGATGGTTCTATACCACAACAACAGTTTGCCTTTAAATCAATAAGTGAAATTGA GAGTACTGAAAACAACTCCATACTTGATATAGTTGGCATTGTGACATCCGTGAACCCTTCGGTCTCTATCATGAGAAAGAATGGCATGGAGACTCAGCGA AGAACCGTGAATGTGAAGGATAGTTCAGGCAGAAGTGTTGAGCTAACTCTTTGGGGAGATTTCTGTAACAAAGAAGGTCAAGGTCTGCAAGAGATGGTGG ATTCGGGGATATTTCCAGTACTAGCTGTGAAAGCAGGAAAGGTTAGTGATTTCACTGGGAAGTCTGTAGGGACGATTTCATCTTCTCAGCTATTCATAAA TCCAGAAATTCCTGAAGCACAAGAGCTGAGAGACTGGTTTAACCGAGGAGGGCGGAACGCTGCTACTGTATGCATTTCCAAGGACTGTGACTAG
AA sequence Show only first row Show all	>Lus10033436 pacid=23172206 polypeptide=Lus10033436 locus=Lus10033436.g ID=Lus10033436.BGIv1.0 annot-version=v1.0 MPVNLTPNAIAAIIAGDLNSKPLVQVTDIKLCGSAQERYRMMISDSVSTQQAMLATQLNDRVKTGCVKIGSVVQLIDYICSDVQNRRIIVVLKMETIVLD CGIIGNPKCVADMTAQKTLTNVSSAQSGSGFYNDSSSLNNGGNMQSFRPAFNAQNAGNNMQGLQPTSFPQNQGTNVKGTRPLLNNARNGSNGMMRPATWN NAQSYGPSVQPAYQPPPSYINRGAIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVD RFYDVIEVGRVYLIAKGNLKPAQKNFNHLKNEWEIFLEAASTVDLLPEEDGSIPQQQFAFKSISEIESTENNSILDIVGIVTSVNPSVSIMRKNGMETQR RTVNVKDSSGRSVELTLWGDFCNKEGQGLQEMVDSGIFPVLAVKAGKVSDFTGKSVGTISSSQLFINPEIPEAQELRDWFNRGGRNAATVCISKDCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	0	1
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	4.9	0.9418
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	6.9	0.9181
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10032647 [exp]	8.0	0.9251
AT5G11560			catalytics (.1)		Lus10022143 [exp]	8.9	0.9303
AT3G55160			unknown protein		Lus10007253 [exp]	9.9	0.9391
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	10.6	0.9281
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	10.8	0.9340
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	10.8	0.9373
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10040194 [exp]	11.6	0.9116
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	12.0	0.9222

Compare expression of checked genes

Lus10033436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.