Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19530 381 / 3e-132 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23820 144 / 5e-40 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 137 / 2e-37 SPDS2 spermidine synthase 2 (.1) AT5G53120 107 / 5e-26 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000469 [exp] 589 / 0 AT5G19530 407 / 2e-142 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026457 [exp] 383 / 2e-132 AT5G19530 485 / 4e-173 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10004913 [exp] 372 / 2e-128 AT5G19530 441 / 2e-156 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010538 [exp] 372 / 2e-128 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10030629 [exp] 135 / 6e-37 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10029169 [exp] 132 / 3e-35 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 132 / 3e-35 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 125 / 7e-33 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 116 / 3e-29 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222200 [exp] 390 / 8e-136 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G089200 [exp] 372 / 3e-128 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 365 / 6e-126 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G147200 [exp] 139 / 6e-38 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G094600 [exp] 136 / 4e-37 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 108 / 2e-26 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 97 / 3e-22 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10033437 pacid=23172152 polypeptide=Lus10033437 locus=Lus10033437.g ID=Lus10033437.BGIv1.0 annot-version=v1.0 ATGTGGACGGTTGGGTTGAGAGCTTTTCTGGTGCTGTACATCGGGGCACTTGCTCCAGGGGCAGCCTTGCCGCCGGCGGAGGAACAACCAGCTGACGGTG ACGACGTGGCAGCGGCGCAGCAGGAAGAAGAAGAAGGTGGCAGCGACATTTGGTTCCATGAAGAAGTTGACTCCCATCTCAAGCTCTCCTACGCTATCAA CCGTGTGCTGCATTCTGGTACCAGCCCGTACCAACAAGTCGACCTCATCGACACCAAGCACTTTGGAAAGGTTTTGTTGATTGACGGCAAAGTACAAAGT GCTGAAAGCGACGAGTTTATTTACCATGAGCTCCTCGTCCATCCTCCCCTCTTGCTCCACCCTAAGCCGCAAAGAGTGTTCATAATGGGAGGAGGTGAAG GATCCACGGCTAGAGAGGTTCTGAACCACGCGAGTGTGGAAAAAGTGGTGATGTGCGACATCGACAGTGTGGTTGTTGATTTCTGTCGCTCTCATCTCGC CGCCAACGCACTTGCCTTTGCAGACCCCAGGCTCCAAGTCGTCATCAACGATGCTAAGGCCGAGTTGGAAAAGACAACGGAGGATAAATTTGACGTGATC ATAGGAGACTTGGCGGACCCCTTGGATGGTGGGCCATGCAACCAGCTCTACACCAAATCATTTTACGAGCAAGTCGTCAAGCCCAAGCTCCATCCTAATG GCATTTTTGTCACCCAAGCTGGGCCAGGAGGAGTTCCTTCTTCCCACAAGATCGTCTTCACCTCCATTTACAACACCTTGAAGCAGGTTTTCAAGTTTGT GGTGCCATACACCACTCATATCCCGTCTTACATGGATACTTGGGGATGGATCATCGCGTCTGATGAAGCACTGAGGTTGGATGTGCAAGAAATTGACAAA AGGATTGGAGAAAGGCTGAAGAGCGCCCCTCTCTACTTTGATGGTGCTTCCTTCATGGCTTCCACGGTCATGAACAAGATCCTTCGTACATCGCTGGCGG AGGAAAAGCATGTATTCACCGAAAAGGATGGGAGGTTCCTTCACGGCCATGGAGTTGCTGCTGCCGCCGATGACAAAATCAACGAGTGA
AA sequence Show only first row Show all	>Lus10033437 pacid=23172152 polypeptide=Lus10033437 locus=Lus10033437.g ID=Lus10033437.BGIv1.0 annot-version=v1.0 MWTVGLRAFLVLYIGALAPGAALPPAEEQPADGDDVAAAQQEEEEGGSDIWFHEEVDSHLKLSYAINRVLHSGTSPYQQVDLIDTKHFGKVLLIDGKVQS AESDEFIYHELLVHPPLLLHPKPQRVFIMGGGEGSTAREVLNHASVEKVVMCDIDSVVVDFCRSHLAANALAFADPRLQVVINDAKAELEKTTEDKFDVI IGDLADPLDGGPCNQLYTKSFYEQVVKPKLHPNGIFVTQAGPGGVPSSHKIVFTSIYNTLKQVFKFVVPYTTHIPSYMDTWGWIIASDEALRLDVQEIDK RIGERLKSAPLYFDGASFMASTVMNKILRTSLAEEKHVFTEKDGRFLHGHGVAAAADDKINE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10033437 [exp]	0	1
AT3G01190			Peroxidase superfamily protein...		Lus10006756 [exp]	4.9	0.7759
					Lus10022938 [exp]	9.1	0.7190
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10032941 [exp]	10.0	0.6931
					Lus10017802 [exp]	12.4	0.6820
AT4G18220			Drug/metabolite transporter su...		Lus10028132 [exp]	12.5	0.6884
					Lus10024160 [exp]	13.9	0.6649
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005776 [exp]	16.9	0.6536
AT1G61105			Toll-Interleukin-Resistance (T...		Lus10011216 [exp]	18.2	0.6819
					Lus10037542 [exp]	18.8	0.6013
					Lus10018646 [exp]	19.4	0.7092

Compare expression of checked genes

Lus10033437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.