Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06210 1389 / 0 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) AT3G04240 59 / 2e-08 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 47 / 9e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G48150 44 / 0.0005 CDC23, APC8 anaphase-promoting complex subunit 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000471 [exp] 1642 / 0 AT2G06210 1293 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Lus10000472 [exp] 223 / 1e-65 AT2G06210 212 / 2e-62 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Lus10003113 [exp] 58 / 5e-08 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 58 / 5e-08 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 53 / 2e-06 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033182 [exp] 51 / 6e-06 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10010627 [exp] 50 / 9e-06 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10017009 [exp] 46 / 0.0002 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143300 [exp] 1494 / 0 AT2G06210 1507 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Potri.005G234900 [exp] 53 / 1e-06 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.013G051400 [exp] 53 / 2e-06 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 50 / 1e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075700 [exp] 48 / 4e-05 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 48 / 4e-05 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10033440 pacid=23172060 polypeptide=Lus10033440 locus=Lus10033440.g ID=Lus10033440.BGIv1.0 annot-version=v1.0 ATGGCGTCGGTTTATATTCCTGTGCAGAACTCCGAGGAGGAGGTAAGAGTGGTCTTGGATCAGCTGCCGCGGGATGCCTCTGATATTATCGACATTCTAA AGGCCGAGCAAGCTCCTCTCAATTTGTGGCTTATTATTGCGAGAGAATACTTTAAACAAGGGAAGGTTGACCAGTTCCGGCAGATATTGGAAGAAGGATC AAGTCCTGATATTGATGAATATTATGCCGATGTTAGATATGAGAGGATCGCTATCCTCAATGCTCTTGGCGCTTACAATTGCTACCTTGGAAAGATTGAG ACAAGACAAAAAGAAAGGGAGGAATATTTCATACAGGCTACCAGGCATTATAACAAAGCTTCAAGGATTGACATGCATGAACCTTCTACTTGGATTGGGA AAGGTCAGCTTCTACTGGTCAAGGGTGAGCTAGAACAGGCTTCTTCTGCTTTTAGGATTGTATTAGATGGAGATCGTGATAATGTACCAGCTCTATTGGG TCAGGCTTGTGTTGAGTTTAATCGCGGGAGTTACAGTGAATCACTGTCACTGTATAGGAGAGTATTACGAATATTTCCTGATTGTCCTGGACCTGTCAGG CTTGGTATCGGTCAGTGTCAATATAAGATGGGCCGCTTTGAAAAAGCCCGAAAGGCATTTGAACGGGTTGTACAGGCAAATCCAGACAATGTTGAGGCTC TAGTTGCACTAGCAATTTTGGACTTGCAAACAAATGAAGCTGCTCATACAAGGAACGGGATGGAAAGAATGAAACAAGCTTTTGAGATTTACCCTTACTG TCCTATGGCTCTTAATTACCTAGCCAATCACTTTTTCTTCACTGGTCAGCACTTCTTAGTTGAGCAACTGATGGAAACTGCACTGACTGTCACCAATCAT GGGCCTACAAAGTCACATTCGTACTATAATTTAGCTCGTTGTTACCATAGCAAGGGCGATTATAAAGCAGCCTTAAGATATTACCATGCTTCAGTCCAGG AAATAACTAAGCCCAGTGAATTTGTGTTCCCGTATTTTGGTTTGGGTCAAGTACAACTAAAGTTAGGAGATACAAAGAGCGCTGTGTCAAATTTTGAAAT GGTTTTGGAGGTTTACCCGGATAATTGTGATACTTTGAAAGTTCTCGGACATGTATATGTTGGGCAGCCCGAAAAAGCCAAGGACTTTTTGAAGAAGGCT ACAAAAATTGATCCTCGTGACGCCCAGGCATTTCTTGATCTGGGGGAGTTGTTAATCACGTCTGATACTGCAGCTGCACTTGATTCATTCAAGATGGCAT CCAAACTAATGAAGAAGCAAGACGTGCCAGTGGAAGTGCTGAATAACATTGGTGTCATCCATTTTGAAAGGGAAGAGCTTGAGGATGCTCTTGTAGCTTT TAAAGAGGCACTAGGTGATGGTTTATGGCTCAGTTTCCTTGATGGTACAAGAAAGATCACTTCATCTGTTCTTCAGTACAAGGATGTGCAACTGTTTCAC CAACTTGAGGAAGATGGCGTTAATGTGGAACTACCATGGAATAAAGTTACACCTTTGTTTAACCTGGCCAGATTACTGGAGCAGTTGCACAAAACCGAAA CTGCTGCCATCTTTTACCGTCTGATATTGTTCAAGTATCCAGATTATGTAGATGGATATCTCCGGCTTGCTGCAATTGCAACATCTAGAAATAATCACCA CTTAAGCATTGAACTGGTAAATGAGGCTCTGAAGTTGAATAACAAGTGCCCTAATGCATTGTCAATGCTCGGTGAATTGGAGCTAAAAAATGATGATTGG GTTAAGGCGAAAGAAACATTGCGTGCTGCTAGTGATGCAATGGATGGGAAAGATTCTTACGCTACACTTGCTCTGGGAAACTGGAACTATTTTGCTGCAT TGCGTAATGAGAAAAGGAACCCTAAACTGGAATCAACTCACTTGGAGAAAGCCAAGGAATTGTACTCCAGAGGCCTGGGTCAGCACACATCTAACTTGTC TGCAGTCCTGGTTCAGCACACATCTAACTTGTATGCAGCCAATGGAGCCGGAATAGTGTTGGCTGAAAAAGGGAACTTTGATGTAGCCAAAGATCTTTTC ACACAGGTCCAGGAAGGTGCAAGTGGAAGTAGCTTTGTACAGTTGCCAGATGTTTGGATAAACTTGGCACATGTGTATTTTGCTCAGGGTAATAATGCCT TGGCTATAAAAATGTACCAGAATTGCTTACGGAAATACTATCATAATACCGACTATCAAATTCTCCTCTATATGGCACGCACTTATTATGAAGCTGAACA GTGGCAAGACTGCAAGAAAACTTTGTTGAGAGCAATACACTTAGCCCCTTCAAATTATACACTTAGGTTTGATACAGGCGTTGCAATGCAGAAGTTCTCT GCTTCCACACTACAGAAGACAAAGAGGACGGTAGATGAGGTTCGGTCCACAGTTGATGAGCTGGAAAATGCTGTTCGTGTCTTTAGTCAGCTGTCTGCTG GGGCCAACCTCCAGATCCATGGGTTTGATGAGAAGAAGATAAACACTCATGTCGAGTATTGCAAACATTTATTAGAGGCTGCCAAGGTTCACAGAGAAGC TGCGGAGCGAGAAGAGCAGCAAAACAAGCAGAGGCAAGAAGTTGCTCGTCAGATGGCTTTAGCTGAAGAAGCCCGTCGCAAGGCCGAAGAACAAAGGAAA GCTCAGATGGAGAGGAGGAAAATTGAGGATGAACGTAAACGGATCCGGCAACAAGAAGAGAACTTTCAGCGTGTCAAGGAACAATGGAAGAGTAGTTCAG CTTCTAAGCGGAAGGATAGATTGGATATCATTGATGATGATGAGGAGGTTGGGCAGAGTGGAGGTGGGAGGAGGAGGAAGAAAGGTGGAAAGAGGAGAAA GAAGGAGAAAACCTCAAAGTCACAATACGACAAGGAAGAAGGAGAAGCAGAGATGGATGATCATGAAGAGGGGGAGATGCATGAGAGTTATGGGCAGAAT AGAAATGAGGCGGAAGATCAGGATCAGGATCAAAATCTTCTTGCTGCAGCTGGGCTTGAAGATTCTGATGCAGAGGATGAAGAGGCGGCAGCGACTGCAA CAGCTGCGAGGAGGAGGCGGGCATTGTCAGAATCGGAGGACGACGAACCAATCCCTGTAAGAGAAGATTCTAATGACGTGCACGTGAGTGATGGAGAAGC TGCCGCCAAGGATCATGGCGACGATGCTGGTCTTGATGGGGAGGATTAA
AA sequence Show only first row Show all	>Lus10033440 pacid=23172060 polypeptide=Lus10033440 locus=Lus10033440.g ID=Lus10033440.BGIv1.0 annot-version=v1.0 MASVYIPVQNSEEEVRVVLDQLPRDASDIIDILKAEQAPLNLWLIIAREYFKQGKVDQFRQILEEGSSPDIDEYYADVRYERIAILNALGAYNCYLGKIE TRQKEREEYFIQATRHYNKASRIDMHEPSTWIGKGQLLLVKGELEQASSAFRIVLDGDRDNVPALLGQACVEFNRGSYSESLSLYRRVLRIFPDCPGPVR LGIGQCQYKMGRFEKARKAFERVVQANPDNVEALVALAILDLQTNEAAHTRNGMERMKQAFEIYPYCPMALNYLANHFFFTGQHFLVEQLMETALTVTNH GPTKSHSYYNLARCYHSKGDYKAALRYYHASVQEITKPSEFVFPYFGLGQVQLKLGDTKSAVSNFEMVLEVYPDNCDTLKVLGHVYVGQPEKAKDFLKKA TKIDPRDAQAFLDLGELLITSDTAAALDSFKMASKLMKKQDVPVEVLNNIGVIHFEREELEDALVAFKEALGDGLWLSFLDGTRKITSSVLQYKDVQLFH QLEEDGVNVELPWNKVTPLFNLARLLEQLHKTETAAIFYRLILFKYPDYVDGYLRLAAIATSRNNHHLSIELVNEALKLNNKCPNALSMLGELELKNDDW VKAKETLRAASDAMDGKDSYATLALGNWNYFAALRNEKRNPKLESTHLEKAKELYSRGLGQHTSNLSAVLVQHTSNLYAANGAGIVLAEKGNFDVAKDLF TQVQEGASGSSFVQLPDVWINLAHVYFAQGNNALAIKMYQNCLRKYYHNTDYQILLYMARTYYEAEQWQDCKKTLLRAIHLAPSNYTLRFDTGVAMQKFS ASTLQKTKRTVDEVRSTVDELENAVRVFSQLSAGANLQIHGFDEKKINTHVEYCKHLLEAAKVHREAAEREEQQNKQRQEVARQMALAEEARRKAEEQRK AQMERRKIEDERKRIRQQEENFQRVKEQWKSSSASKRKDRLDIIDDDEEVGQSGGGRRRKKGGKRRKKEKTSKSQYDKEEGEAEMDDHEEGEMHESYGQN RNEAEDQDQDQNLLAAAGLEDSDAEDEEAAATATAARRRRALSESEDDEPIPVREDSNDVHVSDGEAAAKDHGDDAGLDGED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	0	1
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	1.7	0.8819
AT3G46920			Protein kinase superfamily pro...		Lus10019577 [exp]	3.2	0.8849
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	3.5	0.8927
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	6.3	0.8784
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	7.2	0.8639
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	8.1	0.8784
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	8.1	0.8665
AT3G19540			Protein of unknown function (D...		Lus10026604 [exp]	8.7	0.8506
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	12.5	0.8771
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	14.7	0.8503

Compare expression of checked genes

Lus10033440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.