Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 170 / 2e-48 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 157 / 3e-45 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G37740 142 / 3e-37 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 123 / 2e-30 GRF ATGRF1 growth-regulating factor 1 (.1) AT2G36400 120 / 6e-30 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 108 / 4e-26 GRF ATGRF4 growth-regulating factor 4 (.1) AT5G53660 103 / 4e-24 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G24150 92 / 4e-20 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 79 / 1e-15 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 43 / 0.0004 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000473 [exp] 543 / 0 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10020352 [exp] 157 / 4e-44 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10037668 [exp] 150 / 1e-42 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10009533 [exp] 156 / 3e-42 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10004455 [exp] 151 / 1e-41 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10015651 [exp] 147 / 1e-41 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10011558 [exp] 134 / 2e-34 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10019274 [exp] 132 / 8e-34 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1) Lus10011559 [exp] 129 / 2e-32 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065400 [exp] 298 / 6e-98 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 293 / 4e-96 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 196 / 5e-59 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 183 / 5e-54 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 163 / 2e-46 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 157 / 2e-44 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.002G115100 [exp] 140 / 2e-36 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G012800 [exp] 140 / 3e-36 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.014G007200 [exp] 139 / 1e-35 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1) Potri.001G132600 [exp] 130 / 6e-34 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10033441 pacid=23172172 polypeptide=Lus10033441 locus=Lus10033441.g ID=Lus10033441.BGIv1.0 annot-version=v1.0 ATGAGTGGAAGAAGCAGTAGCAGATTCCCCTTCACTGCAACTCAATGGCAGGAACTGGAACATCAAGCATTAATCTTCAAGTACATGGCTTCAGGAATTC CCATCCCTCATGATCTCCTCTTCACAATCAAAAGAAGCTCTTCTTCTTCTTCATCTTCATCTTGTTTGGACTCCTCCTCATCGCTTCTCTCCTCAAAGCT CTTCCCTTCCCAGTCTCCCCACATTGGGTGGAGCTGCTTCCAGTTGGGTTTGGGGAGGAAAATAGACCCGGAGCCAGGGAGATGCAGAAGAACTGACGGC AAGAAATGGAGATGCTCAAAAGAAGCTTACCCTGATTCCAAGTACTGCGAGAGACACATGCACAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAAGTTG CTGCTACACAACAACAATCACCATTGATAACTCCATTAACAGCCAAGAACTCATCATCCCCCCCAACACTACTACAATATCCTCACACCTCCCTCTCTTT GCTTTCTTCTTCTTCGTCTACTACTACTGAACATCAGTCTCACCAGATTAACCACCATTACCAACATCCTACTCCTCCTTCTGGATCTTACAACAACCAC CATCATTTGTTCCTCTCGTCCTCTCATGCAGCTGCTGTTAGGCCACAACAGACTAATGACTCCACCAATTTGCTTCTAGACTCTGCTGGATATTATTCTC ACTCCAACACGGATTACAGAAGGAACAGGAGCATTTACGCGTTAAAAGAAGAGGTGGACGAGCACGCATTCTTCTCGGAGACATCTGGCTCAATCAGAAG TTCCGAGGAAGCGTGGCGATTGAGTCCACTGGCAATAAACTCTTCGTCATCATCTTCATCTTCTTCCTCATCTTCAAAACAGAGGAGTTCATCTCATCAG CATCAGCATCATCATCAGGAGTTACAGAACCAGAACCAGAACCAGAAGAATGACTACTACTCTAATTACCTCCAGCTCCAGAGCAGCGATAATATTGACA GTTGTACTACTAAGAATCAGAATAATAATGGCTGTTACATTGACGCGGCGGGCAAGTCATCCCAATCTATGATGAGATTTGACAGAGTGGTGAATAGTAA TGAGCCCCAGAACCAGAAGAGAGTTCATCGATTCTTTGATGAATGGCCGCCGAGGAACAAAGAGTCGGCGTCGTGGCTACAACTGGATGATAAATCGTCC TTGAACAACACAACTCTGTCCATCTCAATTCCCAACTCCACTTCCACCATGGACTTGCCAATCTTCGGCTCAAGGACCTCCTATCATCAACAACAATAA
AA sequence Show only first row Show all	>Lus10033441 pacid=23172172 polypeptide=Lus10033441 locus=Lus10033441.g ID=Lus10033441.BGIv1.0 annot-version=v1.0 MSGRSSSRFPFTATQWQELEHQALIFKYMASGIPIPHDLLFTIKRSSSSSSSSSCLDSSSSLLSSKLFPSQSPHIGWSCFQLGLGRKIDPEPGRCRRTDG KKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVAATQQQSPLITPLTAKNSSSPPTLLQYPHTSLSLLSSSSSTTTEHQSHQINHHYQHPTPPSGSYNNH HHLFLSSSHAAAVRPQQTNDSTNLLLDSAGYYSHSNTDYRRNRSIYALKEEVDEHAFFSETSGSIRSSEEAWRLSPLAINSSSSSSSSSSSSKQRSSSHQ HQHHHQELQNQNQNQKNDYYSNYLQLQSSDNIDSCTTKNQNNNGCYIDAAGKSSQSMMRFDRVVNSNEPQNQKRVHRFFDEWPPRNKESASWLQLDDKSS LNNTTLSISIPNSTSTMDLPIFGSRTSYHQQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	0	1
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	1.0	0.9902
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	3.2	0.9864
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	3.9	0.9808
AT3G58690			Protein kinase superfamily pro...		Lus10017647 [exp]	4.1	0.9649
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	4.2	0.9768
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	4.9	0.9804
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	5.0	0.9787
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011731 [exp]	5.8	0.9556
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	6.0	0.9760
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	6.5	0.9764

Compare expression of checked genes

Lus10033441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.