Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35560 698 / 0 DENN (AEX-3) domain-containing protein (.1) AT2G20320 219 / 2e-59 DENN (AEX-3) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017173 [exp] 764 / 0 AT5G35560 456 / 2e-153 DENN (AEX-3) domain-containing protein (.1) Lus10000499 [exp] 215 / 7e-59 AT2G20320 918 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10022854 [exp] 197 / 6e-53 AT2G20320 852 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10006529 [exp] 55 / 8e-09 ND / Lus10012269 [exp] 54 / 7e-08 ND / Lus10007712 [exp] 48 / 2e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143000 [exp] 779 / 0 AT5G35560 879 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.002G255500 [exp] 217 / 1e-59 AT2G20320 906 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.018G065501 [exp] 0 / 1 AT5G35560 0 / 1 DENN (AEX-3) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0330 [flax] [poplar] AVL9 PF02141 [flax] [poplar] DENN DENN (AEX-3) domain CL0431 [flax] [poplar] PF PF03456 [flax] [poplar] uDENN uDENN domain
Representative CDS sequence Show only first row Show all	>Lus10033443 pacid=23172118 polypeptide=Lus10033443 locus=Lus10033443.g ID=Lus10033443.BGIv1.0 annot-version=v1.0 ATGTCCGAGAAGGAAGACGCTGGAAGCCCCAGCTGGAGTTCTTCGTTCCTTGCACAGACAACTGAAGATGTAGCAAAAGCTGTTGCCGCTGCCGCTGCCA CCACTGTTCGTTCTCCACGGCCCTCTGTGATTTTTTCGTCGGCAGAGGAAAACCCTGGAAGCCCACTTCAGAAGTTTCAGCGCCAAGTCTCCAAGGTGCT CAAAGGCATTTCGCCTCCTCGCCGTGAAGTGAGAATTGGGAATTATAATCCGGAGGTTCTAACTAGCCAGAAGCGGCAATGGGCAAGTTTTCAGCTTCAG CACTTGGATCATCGGGCCTTAAAGGAGTCATCCAAACTTTTTGAAAGCATGGTCGTTGTTGGACTTCCACCAAACTGTGATGCTCAGTCACTTCAAAGAC AATTCTGTGCAAGAAAGTCTGAAGGTTCTGGCAGATTGCAAACTACTATTGCTTCTCAGAATCAGTCTCGTGTAGAACCTACTCTTGAGCCTCAGGTCTT ATTTGTTTACCCTCCAGACAAGCTACTGCCTCTCAAGCACAAGGATCTCCTATCATTTTGCTTTCCTGCTGGCGTGGAGGTTAAAGCTGTGGAGAAAACT GCTTCCATGAGTGAGTTGAATCAGCTCCTTCTCTCACAGGAGACAACGGATCTTTCAATTATGAGACCAGGACACCCATTTGATACTGATCATGGTAGTA CTCGTTCTTATTGGCAGGAGCATTTCAAGCAGAGCGACTTGTCATTTGTTTTCCGATTGCAGGTTGCTGATGATTCAACACTGTACGGGTGCTGTGTTCT TGTGGAAGAAATCATTCAAAAACCATCTGGATTGCTTTCTGTTGTTACAGACAAACAGCCTTCAATCCCGACTTTGAGCCGTTACATGCTTACAACACGA AGATGTTATTGCATTCTTACACGTCTTCCTTTCTTTGAATTACATTTTGGAGTGTTAAGTAGTATTTTTACTGAAGAACGATTGGAAAGGCTTACAAAAG GTATCGGTTTCCTGGACCTTGATTTCTTCGAGGGACGCAGCAGGGAAAATAGTTCGCAAGACAATTTAGACAGTACATCAGAAGAACAGAAAGTAGGGGA TTTGCCGCCCAAACCAGCAGAGTTGTCAAAGCACTTTGGGCACCATGTTCCAGTTGATAGTGAAAACCACTTGGGGCACCATGTTCCTGAGGGTAATCCT TTAATAACAAAAAGTGACAAAGATAATGATGGTACAGTTCATTCTGGAACAGATGCCACTCTCAACTGTCAACCTGGTACCACAGACCATGAAGTTCGTA TTAGCGAGGCTGATGATCCATCAATTAAGTTAGTAGGAGAAAGGCGCTTGCCAAATCCGTCTCTTCCTTTGCTCCGTCTATACCCATCTGAAAGCTCTGA ATCTTCTCCAAGTTTCCAGGGATCTCCAAGCGAAGACCGGAATTTCCGCAGTGATGTTGACGATACTGAGATGGAAGAGGCTTCTTTTTCTGGCCAAGAA GAGTCAAATGATCACCTTCGCATTCTAGAATGGGCAAAGGAAAACAACCGTGGGTCATTGCAAATACTTTGTGAGTATTACCATTTGCAAAACCCTGAGA GAGGTGCAGCAATTAAACTTCATCCATTAGAGCATCTTCATCCCTTGGAATTTCGTAGACCAGATGAAACAGTGTTGCATATAGCTGGTTCAACTATTGA TTTGAGATCTTGCAGCACAAGTTTTGAAATAGCTGAGGCGTACAATGCGCTCTTGGCAGAAGAGGAAGCAACTGCGTTGTCAACTTGGACAGTGGCATGC ATATGTGGAGCCTTGAGACTTGAACACGGAATTCTGTCTGCTTCCGTTTTATCGATTATTCCGCTGATTCGTCCTTACCAGTGGCAAAGCCTACTGATGC CGGTTTTGCCAGATGACATGCTAGACTTCTTGGATGCTCCTGTTCCATACATAGTAGGAGTAAAAAACAAAACCAGTGAAGTGCAGTCAAAGTTAACCAA TGCTATTGTAGTTGATATTAACAAGAATCAGGTTAAGTCACCTGGGCTACCTCAACTACCAAGACACAGAGAGCTAATTTCATCGTTGAGTTCATATCAC GCAAAGCTTGTGGGGTTAAGCTTTTCTGCCAGGAGGAGACCAGTGTACGAATGCAACGATGAGCAGATTCTAGCTGCAAAGAGCTTCCTACGAATATTAA GATCTTACTTGGACAATCTTTGCTCCAACCTCCGTTCCCATACAATTACAAATGTTCAATCGAACAATGATAAGGTGTCATTGCTATTAAAAGAGAGTTT TATAGACTCCTACCCAAGTCGTGATCGGCCATTTATGAAGTACGGTGAGGGCTGCTACTTCTGGGTTAAACTCCGTGACAATGTAAGAGTGGACGGAGGA TCCTTGAAGTCGGGTACCTTTCTCGATGGTCATATAATTACTGCCATGGCTTAA
AA sequence Show only first row Show all	>Lus10033443 pacid=23172118 polypeptide=Lus10033443 locus=Lus10033443.g ID=Lus10033443.BGIv1.0 annot-version=v1.0 MSEKEDAGSPSWSSSFLAQTTEDVAKAVAAAAATTVRSPRPSVIFSSAEENPGSPLQKFQRQVSKVLKGISPPRREVRIGNYNPEVLTSQKRQWASFQLQ HLDHRALKESSKLFESMVVVGLPPNCDAQSLQRQFCARKSEGSGRLQTTIASQNQSRVEPTLEPQVLFVYPPDKLLPLKHKDLLSFCFPAGVEVKAVEKT ASMSELNQLLLSQETTDLSIMRPGHPFDTDHGSTRSYWQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEEIIQKPSGLLSVVTDKQPSIPTLSRYMLTTR RCYCILTRLPFFELHFGVLSSIFTEERLERLTKGIGFLDLDFFEGRSRENSSQDNLDSTSEEQKVGDLPPKPAELSKHFGHHVPVDSENHLGHHVPEGNP LITKSDKDNDGTVHSGTDATLNCQPGTTDHEVRISEADDPSIKLVGERRLPNPSLPLLRLYPSESSESSPSFQGSPSEDRNFRSDVDDTEMEEASFSGQE ESNDHLRILEWAKENNRGSLQILCEYYHLQNPERGAAIKLHPLEHLHPLEFRRPDETVLHIAGSTIDLRSCSTSFEIAEAYNALLAEEEATALSTWTVAC ICGALRLEHGILSASVLSIIPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAIVVDINKNQVKSPGLPQLPRHRELISSLSSYH AKLVGLSFSARRRPVYECNDEQILAAKSFLRILRSYLDNLCSNLRSHTITNVQSNNDKVSLLLKESFIDSYPSRDRPFMKYGEGCYFWVKLRDNVRVDGG SLKSGTFLDGHIITAMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35560			DENN (AEX-3) domain-containing...		Lus10033443 [exp]	0	1
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	1.4	0.8749
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	5.8	0.8138
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	13.5	0.8014
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10023157 [exp]	16.9	0.7488
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	22.4	0.7799
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	24.3	0.7903
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	29.9	0.7882
AT5G23490			unknown protein		Lus10019229 [exp]	31.6	0.7603
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	36.3	0.7536
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	38.2	0.7797

Compare expression of checked genes

Lus10033443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.