Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78230 432 / 1e-143 Outer arm dynein light chain 1 protein (.1) AT4G03260 245 / 2e-72 Outer arm dynein light chain 1 protein (.1.2) AT2G34680 60 / 4e-09 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT1G61180 56 / 1e-07 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G19680 54 / 2e-07 Leucine-rich repeat (LRR) family protein (.1) AT4G39400 49 / 1e-05 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G45800 47 / 4e-05 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT5G07280 47 / 5e-05 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G61310 44 / 0.0002 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G56370 44 / 0.0003 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020932 [exp] 1056 / 0 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10018514 [exp] 243 / 1e-71 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10039729 [exp] 204 / 2e-57 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2) Lus10013308 [exp] 66 / 4e-11 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10005198 [exp] 62 / 9e-10 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10038534 [exp] 62 / 1e-09 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10012715 [exp] 55 / 7e-08 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10010891 [exp] 53 / 2e-07 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10021131 [exp] 54 / 4e-07 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097800 [exp] 498 / 1e-169 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.005G164000 [exp] 498 / 2e-169 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.019G119300 [exp] 247 / 4e-73 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.019G119500 [exp] 246 / 8e-73 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.013G150300 [exp] 214 / 8e-61 AT4G03260 504 / 2e-170 Outer arm dynein light chain 1 protein (.1.2) Potri.004G199200 [exp] 71 / 7e-13 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.011G090200 [exp] 59 / 6e-09 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.001G357700 [exp] 56 / 9e-08 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.018G086200 [exp] 54 / 2e-07 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.006G163900 [exp] 51 / 1e-06 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10033444 pacid=23143384 polypeptide=Lus10033444 locus=Lus10033444.g ID=Lus10033444.BGIv1.0 annot-version=v1.0 ATGGAGTTCAACAAAGAGCTGAAAAGCTTGAAGGAGGTCAAGGTTTCAAGGCCAATGAATAAACCTCTCAAGAGTGATGATCATACAAATGTGGATTCTT CTATCAATCTCTCAGACACTACAAGAAACTGCCCGGATAACGACAGAAATTCAGGTGAAGAAGCTCACGTAACACAAGTATCGTACGAGGAGCCTGTAAA GAATGTCTGGTTAATGGGTGAAGAAGAAGAGTTCACCCCAACTCCGAGAAGCCCGAACTTGGATTCCTCTGAAGATGGGCATATCAGCGATCCTGGGACT AGGATGGTGGATCCTCCCTTCTGGGGCTCGCCTAAGCTCAAGCGATCCTGCTCGAACCTGGAAACCAGAAAAGTCATGAGAAAAATGGATTATTCTTCTG CTGCAGATTTGCCTCCTGAGTATTTTAGGCCAAGCAGTCCTGTGTCTGTCATTAGCTGCCAAAGTGCTGACAGGGTGATGCTCAAAAAGCATTCTTCGAG TCAATTTTTTCCATCTGGAAGCAAGAAACTTTGGTGGAAGTTGTTCCTATGGAGCCACAGGAACCTGCATAAACCATCATCCACTGCAAAACCAGACCCA TTTCCAGCTGTCTCAAACCAACAAGGTGGATACACTTCGGATACACTCGAACAAAGCATCGGTACAACATCGACCAATTTTCAGTCAACAGCCATAACAG ACGAATTCTCACGCCTTGGCAAACAAAAATGGGACGGTTTTGATGCAAGTAAGGTCGGTGGTGCGTGGCCTAGAGACCACTGGGTTGCAAATGCTTTTTT ATCAAGAGTAGATCAATGGGTGCAGGATGTTGAGATCCAACCCCAACCTGAAGCTGAGACTGCTGCTGAGAATGGCATCATTGATTATCCGCCTTCGCCT GCAAGAAATACGTTACTAGTAGCGCGTGGTTTAGATGACGACATTGCACATGCCAATAGTGTGATCTTATCTCTCAACGCTTCATCAACAGTGGCTCACA TTTGCGGGTCAGGCTTGAAAGTGATTCCATCTTTGTCACCCTTCTCCAGTCTTCGCACCGTGGACTTGTCGAACAACTCCATAGTGTCCATCAGTCCAGG ATCATTGCCTAAGGGTCTCCACGCTGTCAACTTGGCTAGGAACAAAATCAATACCATTGATGGACTGAGAGAACTAACTCGATTGCGGGTAGTGGATCTT AGTTACAACCGCATTTCGCGAATTGGACAAGGGCTGTCAAACTGTACTTTAATTAAGGAACTGTACCTTTCCGGAAACAAAATCAGTCACTGCGAAGGGC TGCATAGACTCCTGAAGCTCACAGTCTTAGACCTCAGCTTTAACAAGATAACAACAACAAAGGCTTTGGGTCAGCTTGTTGCCAATTACATTGCTCTCCA AGCTTTGAACCTCTTAGGGAATCCGGTTCAAACCAACATCGGGGATGACCAGCTACGGAGAGCGGTCCGTCAGCTCCTCCCCAATCTGAAGTATCTAAAC AAGCAACCTATAAAGCCCGAGAGAGCGAGAGAGGTGGCTATGGACAGCGTATCTAGGGCTGCCCTTGGTTCTAGTAGCAGCACTTTTCGACACAGAAGGT TAGGGAGGAGAACTGATACTGCTGCTGGTTCATCATCGTGCATTGCTCAGAGGAGTAGGGCAAGTGCCGGTGGGAAGAGAGGCAAGAACATTGGTAAAAG AAGCCGCAGCCATAGTTCAAAGGGAAGATCTTCATCCACTCCCAGACAACATCATTCCGGCCAAATGTCCGAGACCAGGTTTGTTTCTTAG
AA sequence Show only first row Show all	>Lus10033444 pacid=23143384 polypeptide=Lus10033444 locus=Lus10033444.g ID=Lus10033444.BGIv1.0 annot-version=v1.0 MEFNKELKSLKEVKVSRPMNKPLKSDDHTNVDSSINLSDTTRNCPDNDRNSGEEAHVTQVSYEEPVKNVWLMGEEEEFTPTPRSPNLDSSEDGHISDPGT RMVDPPFWGSPKLKRSCSNLETRKVMRKMDYSSAADLPPEYFRPSSPVSVISCQSADRVMLKKHSSSQFFPSGSKKLWWKLFLWSHRNLHKPSSTAKPDP FPAVSNQQGGYTSDTLEQSIGTTSTNFQSTAITDEFSRLGKQKWDGFDASKVGGAWPRDHWVANAFLSRVDQWVQDVEIQPQPEAETAAENGIIDYPPSP ARNTLLVARGLDDDIAHANSVILSLNASSTVAHICGSGLKVIPSLSPFSSLRTVDLSNNSIVSISPGSLPKGLHAVNLARNKINTIDGLRELTRLRVVDL SYNRISRIGQGLSNCTLIKELYLSGNKISHCEGLHRLLKLTVLDLSFNKITTTKALGQLVANYIALQALNLLGNPVQTNIGDDQLRRAVRQLLPNLKYLN KQPIKPERAREVAMDSVSRAALGSSSSTFRHRRLGRRTDTAAGSSSCIAQRSRASAGGKRGKNIGKRSRSHSSKGRSSSTPRQHHSGQMSETRFVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78230			Outer arm dynein light chain 1...		Lus10033444 [exp]	0	1
AT3G43270			Plant invertase/pectin methyle...		Lus10017375 [exp]	2.0	0.8669
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	3.5	0.7983
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	7.0	0.7836
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	7.6	0.8161
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10040685 [exp]	9.2	0.7972
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	11.2	0.7920
AT5G56510		APUM12	pumilio 12 (.1)		Lus10018710 [exp]	17.0	0.6801
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	23.0	0.7007
AT3G12620			Protein phosphatase 2C family ...		Lus10014024 [exp]	24.9	0.6545
AT1G14310			Haloacid dehalogenase-like hyd...		Lus10036740 [exp]	25.1	0.7025

Compare expression of checked genes

Lus10033444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.