Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22310 54 / 3e-08 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020931 [exp] 205 / 5e-66 AT1G22310 78 / 3e-16 methyl-CPG-binding domain 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164100 [exp] 86 / 6e-19 AT1G22310 100 / 6e-22 methyl-CPG-binding domain 8 (.1.2) Potri.002G097700 [exp] 84 / 3e-18 AT1G22310 105 / 2e-23 methyl-CPG-binding domain 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02178 [flax] [poplar] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Lus10033445 pacid=23143241 polypeptide=Lus10033445 locus=Lus10033445.g ID=Lus10033445.BGIv1.0 annot-version=v1.0 ATGGCCGCCTTCTCATCCGCCGTCAACGCTTCCTCTTCCCAAGTCTCCGGCGACCAACACCCGACTCACAACAACCTCCACGCCGAATCCCTTCCTCTCA TTGACCTCCGACTTCTCTCTCAATCCGAACTACTCTCCCTCTCCCTCTGCTCCTCTACATTCTCCTCCGTCCACTCTCTCCTCAGCGACCCCGATCTTTC CACTCCAAGAATCGATCGCTCCGTCTTCAACGAATCCGCCGGAAGCCGTAAACAGACCTTCTCCCGCCTCCGCCTCGCCCCTCGCGGCAGCTCGCACGCG CCGTCCGCTTCGGGTTCTACTGCGACTCCCTCACATCGTCAGATCTCTGAGGCGCCTCCGCTCCTGGAGGAGAGCCGTCAGATCGTAACGAGACTTAAGT CGCTCTTTGGCGTCGTCGATTCTGATTGCGGTCAGACGGACGGAGACGAGCATAACCTAGTTTCTGTCCCGATCCAGTTCGAAGAAACTATTTCCTCTCT TTGGAATAAGGCACGGACGCTACCGATTGCGCGTATGGAGACCGCTAATTCTGGTTTCAGCCGAGACATTGACCAACCGTTGGTGCTATTGGCTGGATCT GGGAATTCCGGAGGAACGAAGCGGAAGCGAGGTAGGCCAAGGAAAACTCAGGTTGATGTGTATGGTGGTAATGGTAACAAAACGAAGGACGAGAATGAGG CTGTCCTGATGCCTACTGGTAATGGAGTCTTTCTCTGA
AA sequence Show only first row Show all	>Lus10033445 pacid=23143241 polypeptide=Lus10033445 locus=Lus10033445.g ID=Lus10033445.BGIv1.0 annot-version=v1.0 MAAFSSAVNASSSQVSGDQHPTHNNLHAESLPLIDLRLLSQSELLSLSLCSSTFSSVHSLLSDPDLSTPRIDRSVFNESAGSRKQTFSRLRLAPRGSSHA PSASGSTATPSHRQISEAPPLLEESRQIVTRLKSLFGVVDSDCGQTDGDEHNLVSVPIQFEETISSLWNKARTLPIARMETANSGFSRDIDQPLVLLAGS GNSGGTKRKRGRPRKTQVDVYGGNGNKTKDENEAVLMPTGNGVFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10033445 [exp]	0	1
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	3.5	0.8222
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10020222 [exp]	5.9	0.6811
AT4G38710			glycine-rich protein (.1.2)		Lus10012166 [exp]	11.8	0.7600
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002028 [exp]	13.7	0.7670
AT3G57990			unknown protein		Lus10012013 [exp]	17.9	0.7304
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	18.0	0.7478
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	18.7	0.7621
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	19.6	0.7454
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	20.3	0.7375
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	20.6	0.7412

Compare expression of checked genes

Lus10033445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.