Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08920 1005 / 0 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT1G04400 647 / 0 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT3G15620 169 / 7e-45 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT5G24850 108 / 2e-24 CRY3 cryptochrome 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020930 [exp] 1066 / 0 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10011822 [exp] 663 / 0 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10021188 [exp] 646 / 0 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10022095 [exp] 151 / 2e-38 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10020878 [exp] 108 / 2e-24 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 102 / 3e-23 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10000521 [exp] 57 / 2e-08 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10007880 [exp] 47 / 5e-05 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096900 [exp] 1134 / 0 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.005G164700 [exp] 1121 / 0 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.010G071200 [exp] 688 / 0 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.008G166632 [exp] 220 / 1e-67 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.003G060000 [exp] 175 / 5e-47 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.006G277500 [exp] 108 / 3e-24 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.014G128500 [exp] 51 / 2e-06 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.002G204000 [exp] 50 / 3e-06 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12546 [flax] [poplar] Cryptochrome_C Blue/Ultraviolet sensing protein C terminal CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase CL0039 [flax] [poplar] PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10033446 pacid=23143484 polypeptide=Lus10033446 locus=Lus10033446.g ID=Lus10033446.BGIv1.0 annot-version=v1.0 ATGTCTGGTGGCGGCGGAGGGGGAGGCGGAGGCGGAGGCGGATGCAGCTGCGTCGTATGGCTGAGAAGAGATCTAAGAGTAGAAGATAACCCTGCGCTGG CTGCTGGAGTTAGAGCTGGGACGGTGGTGCCGTTATTCATATGGGCGCCTGAAGAAGAAGGTCATTACTATCCTGGAAGAGTGTCCAGGTGGTGGTTGAA GCACAGCTTAGCTCATCTCGATTCTTCACTTCGTAGCCTTGGCGCTCCTCTACTCACCAAGAGATCTACCGACTCCCTCTCCACTCTCCTTGAAGTTCTT CAATCCATTGGCGCCACTCACCTCTTCTTCAACCACTTATATGATCCATTGTCGCTGGTTAGGGATCACAGAGCAAAGGAGGTTTTGACTGCTAGGGGAA TAGTTGTGAGATCTTTTAATGCTGATCTTCTGTATGAACCATGGGATGTTAGCGATGATCAAGGACGTCCTTTCTCAACTTTTGCTTCCTTCTGGGATAG ATGCCTTAACATGCCTTATGATCCTGAATCTCCGCTTCTCCCACCCAAGAGGATCATTGCAGGTGATGTCTCGAGATGTCCATCGGACACGCTGGTATTC GAAGATGAATCGGAGAAGGCGAGCAATGCACTTCTTGCTAGAGCATGGTCTCCCGGGTGGAGTAATGCTGATAAGGCCTTGACCACTTTTATCAACGGAC CTTTGCTTGAGTACTCGAATAATCGGAGGAAGGCTGACAGTGCTACAACTTCGTTTCTGTCTCCGCACTTGCATTTTGGGGAGGTTAGTGTCAGGAAGGT GTTTCATCTTGTTCGGATCAAGCAAGTTCAGTGGGCGAACGAAGGGAACATCCCTGGTGAAGAGAGTGTCAATTTGTTTCTCAAGTCCATTGGTCTTAGA GAATACTCTAGGTACATGAGCTTCAATCATCCATACAGTCACGAGAAGCCTCTCCTAGGACATCTCAAGTTCTTTCCTTGGGTTGTTGATGAAGGCTATT TCAAGGCGTGGAGGCAAGGGAGGACTGGTTATCCATTAGTTGATGCCGGGATGAGAGAATTGTGGGCCACTGGATGGATGCATGACCGGATTCGAGTTGT GGTTTCGAGCTTTTTTGTTAAGGTTCTGCAACTTCCGTGGAGATGGGGCATGAAGTATTTTTGGGATACACTCTTGGATGCCGATTTGGAGAGCGATGCT CTTGGTTGGCAATACATTTCCGGAACTATCCCTGATGGACGTCAGTTCGACCGCATTGATAATCCACAGTTTGAGGGATACAAATTTGATCCTAACGGGG AATATGTTCGTCGCTGGCTACCTGAACTTGCTAGACTTCCAACTGAGTGGATACATCACCCATGGAATGCACCTGAAACGGTACTCCAAGCTGCCGGTAT CGAACTGGGATCCAACTACCCTCTCCCCATTGTAGGGATAGATGCAGCAAAAGTGAGGTTGGAAGACGCACTTGCAGAAATGTGGCAACAGGAAGCTGCA TCAAGAGCAGCCATTGAGAATGGTACTGAAGAAGGCCTCGGAGATTCCTACGACTTCGAACCAATAGCCTTCCCTCAGGATATACAAATGGAGGAGCCGC ACGAACCTGTGAGAAACAATCCTTTGTCTGCAGTTCGCCGCTACGAAGATCAGATGGTACCGAGCATGACCACTTCTCTTCTGAGGGTGGATGATGAGGA AACATCTGCAGACACTCAAAACGCAACCACGGAGGATAGCAGAGCAGAAGTTCCAAGAAATGTGAATTTAGTAAATCCAGAACCAAGAGGAGTGGCTCCG AATGAAGAGGTTATGCAAACAGTTGTTAACAGAGATAACGTCATGCTGCAAGTTAACATCAGGAGGGTTGTCGGAAATGCCGAGGATTCAGCTTCAGAAT CTTCAAGCAATAGTAGCAGGAGGGAGAGGGATGGAGGTGTTGTTCCCGTTTGGTCTCCTCCAACTCCTAGTTACTCGGACCAGTTCGTGGCCGAGGAAAA TGGAATTGGTTCAAGCTCTTCTTACTTGCAGAGGCACCCTCAATCTACTCATCAGATACTTAACTGGACTCGGCTCCCGCAAACTGGGTAA
AA sequence Show only first row Show all	>Lus10033446 pacid=23143484 polypeptide=Lus10033446 locus=Lus10033446.g ID=Lus10033446.BGIv1.0 annot-version=v1.0 MSGGGGGGGGGGGGCSCVVWLRRDLRVEDNPALAAGVRAGTVVPLFIWAPEEEGHYYPGRVSRWWLKHSLAHLDSSLRSLGAPLLTKRSTDSLSTLLEVL QSIGATHLFFNHLYDPLSLVRDHRAKEVLTARGIVVRSFNADLLYEPWDVSDDQGRPFSTFASFWDRCLNMPYDPESPLLPPKRIIAGDVSRCPSDTLVF EDESEKASNALLARAWSPGWSNADKALTTFINGPLLEYSNNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVQWANEGNIPGEESVNLFLKSIGLR EYSRYMSFNHPYSHEKPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDA LGWQYISGTIPDGRQFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPETVLQAAGIELGSNYPLPIVGIDAAKVRLEDALAEMWQQEAA SRAAIENGTEEGLGDSYDFEPIAFPQDIQMEEPHEPVRNNPLSAVRRYEDQMVPSMTTSLLRVDDEETSADTQNATTEDSRAEVPRNVNLVNPEPRGVAP NEEVMQTVVNRDNVMLQVNIRRVVGNAEDSASESSSNSSRRERDGGVVPVWSPPTPSYSDQFVAEENGIGSSSSYLQRHPQSTHQILNWTRLPQTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	0	1
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	1.4	0.8826
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	4.2	0.8199
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	5.5	0.8135
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	5.5	0.8221
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	6.6	0.8159
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	8.1	0.8140
AT2G40480			Plant protein of unknown funct...		Lus10029055 [exp]	9.2	0.7803
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	9.5	0.7888
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	9.9	0.7955
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	10.9	0.8127

Compare expression of checked genes

Lus10033446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.