Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31885 139 / 6e-40 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT4G19030 137 / 3e-39 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT4G18910 137 / 3e-39 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G10380 130 / 1e-36 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT2G34390 130 / 1e-36 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT5G37810 129 / 2e-36 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT5G37820 127 / 2e-35 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT1G80760 117 / 2e-31 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT2G29870 107 / 2e-29 Aquaporin-like superfamily protein (.1) AT3G06100 95 / 3e-23 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020929 [exp] 291 / 1e-99 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10041674 [exp] 128 / 5e-37 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10025744 [exp] 131 / 6e-37 AT5G37820 207 / 6e-66 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10035918 [exp] 130 / 9e-37 AT5G37820 206 / 2e-65 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10029274 [exp] 127 / 1e-35 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10024066 [exp] 124 / 3e-34 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10010153 [exp] 122 / 2e-33 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10035999 [exp] 119 / 2e-32 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10007322 [exp] 115 / 4e-32 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097000 [exp] 207 / 8e-67 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 136 / 3e-39 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G072100 [exp] 134 / 3e-38 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G046800 [exp] 128 / 9e-36 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 122 / 1e-33 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 121 / 4e-33 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.010G112900 [exp] 119 / 8e-33 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 118 / 4e-32 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.011G146900 [exp] 115 / 7e-31 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.017G083300 [exp] 112 / 5e-30 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10033447 pacid=23143513 polypeptide=Lus10033447 locus=Lus10033447.g ID=Lus10033447.BGIv1.0 annot-version=v1.0 ATGGCTCGTGGTGATCGGCCAGCAGAGCTTAGTATTTCCATGGATGAAACTCCACCACGGCAACACCACAACCACCACCGGCACCACCGTCCAACGACCG CCCGCGCTGCGCCGCCGCCTAAAGCAACTTCTTCTTCCTTCATTGCGGATGCCAAATCTAGTGTTCCCCAGGGTTGGTTCGTCCCCCATGACAACAATCC AACTCATTTCCAAAAGGTGCCAATGTATGTGTTGGCTCAGCTGCTGGGAGCTACGCTTGGGAGCCTGACACTGAAAGTTTTGTTTCACAGACAAGCAGAC ATCGTTCCAATAATGACGCAGTACGCTTCTCCAACTTCTGATCTAGAAGCCTTCTTGTGGGAGTTCATCATCACTTTCATCCTCATGTTCAGTATCTGCG CCAATGCCACAGACCACCGTGCTAGTCCGGGGCTTGCCGGCTTTGCGATTGGAGCAACCCTCCTGGTCAACGTCATTATTGCAGGGCCGATCACTGGTGC ATCGATGAACCCAGCAAGAAGCATAGGACCAGCAGTTGCCTCTGGAGTGTATGATAATCTCTGGCTCTACATCTTGGCTCCTGTTCTTGGTGCATTAGCT GCAGCCATGGTCTACAGTGGACTTCGGGTCCCGGTCCTCCCCGACAACAACAACATCAACGATCAAGGAAAGGCCGATCCTAATTAA
AA sequence Show only first row Show all	>Lus10033447 pacid=23143513 polypeptide=Lus10033447 locus=Lus10033447.g ID=Lus10033447.BGIv1.0 annot-version=v1.0 MARGDRPAELSISMDETPPRQHHNHHRHHRPTTARAAPPPKATSSSFIADAKSSVPQGWFVPHDNNPTHFQKVPMYVLAQLLGATLGSLTLKVLFHRQAD IVPIMTQYASPTSDLEAFLWEFIITFILMFSICANATDHRASPGLAGFAIGATLLVNVIIAGPITGASMNPARSIGPAVASGVYDNLWLYILAPVLGALA AAMVYSGLRVPVLPDNNNINDQGKADPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31885		NIP3;1	NOD26-like intrinsic protein 3...		Lus10033447 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	5.8	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	8.2	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	10.1	1.0000
					Lus10024141 [exp]	11.7	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	13.0	1.0000
					Lus10013255 [exp]	14.3	1.0000
					Lus10013259 [exp]	15.4	1.0000
AT3G63170			Chalcone-flavanone isomerase f...		Lus10032083 [exp]	16.1	0.9887
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	16.5	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	17.5	1.0000

Compare expression of checked genes

Lus10033447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.