Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34780 258 / 7e-85 ATAPRL4 APR-like 4 (.1.2) AT4G08930 219 / 4e-70 ATAPRL6 APR-like 6 (.1) AT3G03860 120 / 7e-32 ATAPRL5 APR-like 5 (.1) AT5G18120 107 / 4e-27 ATAPRL7 APR-like 7 (.1) AT2G47470 49 / 2e-06 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT3G54960 49 / 3e-06 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT2G32920 47 / 2e-05 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 42 / 0.0004 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT5G60640 42 / 0.0007 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020928 [exp] 572 / 0 AT1G34780 259 / 2e-85 APR-like 4 (.1.2) Lus10036486 [exp] 378 / 1e-131 AT1G34780 272 / 2e-90 APR-like 4 (.1.2) Lus10010354 [exp] 370 / 3e-129 AT1G34780 268 / 2e-89 APR-like 4 (.1.2) Lus10005703 [exp] 127 / 3e-34 AT3G03860 310 / 7e-106 APR-like 5 (.1) Lus10020283 [exp] 116 / 4e-30 AT3G03860 296 / 3e-100 APR-like 5 (.1) Lus10010274 [exp] 50 / 1e-06 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 49 / 2e-06 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10015160 [exp] 45 / 4e-05 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10031522 [exp] 45 / 6e-05 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164200 [exp] 303 / 2e-102 AT1G34780 364 / 1e-126 APR-like 4 (.1.2) Potri.002G097601 [exp] 303 / 4e-102 AT1G34780 357 / 9e-124 APR-like 4 (.1.2) Potri.013G057100 [exp] 120 / 5e-32 AT5G18120 293 / 3e-99 APR-like 7 (.1) Potri.019G035700 [exp] 115 / 9e-30 AT5G18120 277 / 4e-93 APR-like 7 (.1) Potri.002G198300 [exp] 49 / 1e-06 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 49 / 3e-06 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.008G040100 [exp] 43 / 0.0002 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10033449 pacid=23143442 polypeptide=Lus10033449 locus=Lus10033449.g ID=Lus10033449.BGIv1.0 annot-version=v1.0 ATGGGTTCTCGGATTAGGGTTTCGAAGAGTCGGACATGGGAGGTGGTTTTGGTGGTGGTGGTATTGGCACTCACTCTTTCTGCCACTTCCGCTGCTTCTA AGGATCTGATGTGCCCTAGGCTCTCTATTACAGATTCGATCTTTGGGGTTGGAGAATTGAAACCCGGTTTTCACTCTGCTAATTCTCTGTCTTCCGCCTG CGTCAACGAGGGAGGCGAAGCTGCATTATGGAAAGCACTGGATTTGGTTTACAGTGGTAGTTTGGAGAATATAGCTGTGCTATTTTATGCAGCATGGTGC CCTTTTTCGACAGCTTTAAAACTGGAATTCCCTCTCTTGGCTTCCCTGTATCCATCTATACCCCATATAGCAGTAGAAGAATCAGCCATCCGGCCCAGCA CACTGTCCAAGTATGGAGTTCATGGCTTCCCCACTCTTCTGGTTCTGAATTCTACAACGCGTGTACGCTACCATGGTTCCCGGACACTTAGCTCTCTGGT TACCTTCTACAATGGTGCAACTGGTGTGTTACCTGATAATGCATCGCTTTTGAAGATATCCTACCCTCTGTCCCTTGGAAAGCACGACATTATTAATCCA GAAAGCTGCCCGTTTTCCTGGGCTAGGTCTCCAGAGAAATTGCTAATGCAAGAAACGTACTTGGCTCTTGCATCAGCCTTTGTAATTGTCAGATTCCTCT ACTTAATGCTACCGAGTCTGGTTGTATTTGTGCAACTAGTCTGGAGGAGACAGGTGACTCGTGCAAGGATCAGGAGCATCCTGGATCAGCCGCGAGTCTT TATGACCGATGTTGTCCAGGCATTCAAGTGTCTTGTGAAACCTTGCAAGAAAAGCAATTTACAGGAAGGGGCAATGAACGCAGGAGCATGGGCTTCAAAG TCACTCGTCACAGTAGCAAGAGCGGGAGAAGCAAGCACGAGTGGCACTGCACAGAAATCGTGA
AA sequence Show only first row Show all	>Lus10033449 pacid=23143442 polypeptide=Lus10033449 locus=Lus10033449.g ID=Lus10033449.BGIv1.0 annot-version=v1.0 MGSRIRVSKSRTWEVVLVVVVLALTLSATSAASKDLMCPRLSITDSIFGVGELKPGFHSANSLSSACVNEGGEAALWKALDLVYSGSLENIAVLFYAAWC PFSTALKLEFPLLASLYPSIPHIAVEESAIRPSTLSKYGVHGFPTLLVLNSTTRVRYHGSRTLSSLVTFYNGATGVLPDNASLLKISYPLSLGKHDIINP ESCPFSWARSPEKLLMQETYLALASAFVIVRFLYLMLPSLVVFVQLVWRRQVTRARIRSILDQPRVFMTDVVQAFKCLVKPCKKSNLQEGAMNAGAWASK SLVTVARAGEASTSGTAQKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10033449 [exp]	0	1
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	3.2	0.8248
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	6.5	0.7705
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	9.4	0.7228
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	13.6	0.7532
AT1G62620			Flavin-binding monooxygenase f...		Lus10024598 [exp]	14.1	0.7524
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	17.6	0.7597
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	22.8	0.7392
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	25.1	0.7117
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	29.1	0.7158
AT2G25280			unknown protein		Lus10001925 [exp]	29.4	0.7565

Compare expression of checked genes

Lus10033449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.