Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19090 44 / 9e-06 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G70520 39 / 0.0008 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020927 [exp] 265 / 1e-92 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033389 [exp] 154 / 8e-49 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10009206 [exp] 122 / 3e-36 ND / Lus10015472 [exp] 70 / 6e-16 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10012369 [exp] 62 / 1e-12 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10022828 [exp] 62 / 1e-12 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10028018 [exp] 60 / 6e-12 ND 39 / 5e-04 Lus10011894 [exp] 57 / 9e-11 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10028019 [exp] 57 / 1e-10 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G028100 [exp] 45 / 7e-06 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024228 [exp] 40 / 0.0002 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 40 / 0.0002 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.010G065800 [exp] 40 / 0.0003 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.004G024052 [exp] 39 / 0.001 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 39 / 0.001 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10033450 pacid=23143398 polypeptide=Lus10033450 locus=Lus10033450.g ID=Lus10033450.BGIv1.0 annot-version=v1.0 ATGAAGATAAAAAACAGCAGAAGAGGGCTTGGTACTGCAGCTCTAAGCTGGCTGATGCAGATGCTGATATCAGTCTGCCATGTTACATTCTCCTCTGCTG AAGAGGTCACAGTTTGGTACTGCAGCAACCAGAAGTTCTCAAACGACAACCATCCAGAACTGAGGCATTACGTTCCCGCTGTGCTCGAGCAGTTGCATCA AAGCACACCTGAGTATTCGACCAACTCAGCCATTAAGTATAGATTGACGTATCCTCCTGATCAAAGTCCTGTGCTCTACGCTTCTTCATTCTGCAAGCAG TCTAAGCCTTTAGATTGCGGGCACTGTCTCAGGGCAGCCAAGAGGAAGCTGCTCCATGAATGTACACATGCTCTTGGGGGTCAAGTCTACTCTGAACTTT GCTTCATGCGATTCGAGCTGTATGACTTCTTTCAACTATGA
AA sequence Show only first row Show all	>Lus10033450 pacid=23143398 polypeptide=Lus10033450 locus=Lus10033450.g ID=Lus10033450.BGIv1.0 annot-version=v1.0 MKIKNSRRGLGTAALSWLMQMLISVCHVTFSSAEEVTVWYCSNQKFSNDNHPELRHYVPAVLEQLHQSTPEYSTNSAIKYRLTYPPDQSPVLYASSFCKQ SKPLDCGHCLRAAKRKLLHECTHALGGQVYSELCFMRFELYDFFQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033450 [exp]	0	1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005551 [exp]	3.0	0.9140
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006840 [exp]	4.8	0.8558
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	7.9	0.9068
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028369 [exp]	8.9	0.7824
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	9.0	0.9058
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	11.3	0.9051
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010943 [exp]	12.4	0.8562
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	12.8	0.9037
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	14.5	0.8991
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	14.7	0.8917

Compare expression of checked genes

Lus10033450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.