Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09430 184 / 5e-57 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 174 / 9e-53 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 158 / 2e-46 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 88 / 4e-20 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 84 / 1e-18 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 84 / 1e-18 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 78 / 2e-16 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 75 / 2e-15 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 72 / 2e-14 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 46 / 9e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020926 [exp] 300 / 6e-102 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 181 / 8e-57 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 169 / 6e-51 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 144 / 2e-41 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 110 / 2e-28 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 89 / 2e-20 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 89 / 3e-20 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 83 / 3e-18 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 74 / 4e-15 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097400 [exp] 217 / 1e-69 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 180 / 4e-55 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 174 / 6e-53 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 164 / 6e-49 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 91 / 2e-21 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 83 / 4e-18 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 69 / 2e-13 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 68 / 3e-13 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 66 / 2e-12 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 64 / 1e-11 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10033451 pacid=23143518 polypeptide=Lus10033451 locus=Lus10033451.g ID=Lus10033451.BGIv1.0 annot-version=v1.0 ATGGAGCCATGTCGTCCGCCACTTGGCCCCTCACTTCAACATCTATGTCCCGGACCTCCTCTTCTTCGGCGACTCCTTCTCCACCCGACCAGACCGGTCC GAGTCCTTCCAGGCCCAGTGCCTCATGCGGGCCCTAATACTACTACTGGACTCATCGTTCTCGAAAAAGCTCAGCATCGTTGGGCTCAGCTATGCGCTCG CCTCATCATCGGCGGGTGCGTGCGCTACAGCGTGGCGGCCCAATTCGAAAACGCGGTGGAGAGAGTGGTGATCTGCTGCTCCGGCGTGTTCATGGAGGAG AAGGATCTGAGAAGTGGGGTTTTTAGGGTGGCTGATTTGGAAGTGGCGGCTGATATTTTGGTGCCCCGCCGGCCTGAGAAGCTCAGGGAGTTGGTGGGTT TTACGTTTTACAGGCCCCCGCCGGTTTGGTTGCTACCTTCTTGGTTGCTCAATGATTTCATCCAATCAATGTGTGGGGAGTACACAGAAGAGAAGAAAGA ATTGCTGAGAGCCATTCCAAAAGACAGGAAGCTTTCTGAAATTCCCAAGATTTCTCAGCAAACTCTGATCATTTGGGGAGAGAATGACCAAGTTTTTCCT CTAGAACTTGCCTACAGAATGAAGAGGCATCTGGGAGAGAATACGCAGCTTGCAGTGATTAAGAATGCTGGGCACGCTGTCAACGTTGAGAAACCCAAGG AGTTTCTCAAGCTCTTGAAACTGTTCCTCGTTGATTCCAAGTTCCCTTCGGATACTGCTTTGAATCACAATTGA
AA sequence Show only first row Show all	>Lus10033451 pacid=23143518 polypeptide=Lus10033451 locus=Lus10033451.g ID=Lus10033451.BGIv1.0 annot-version=v1.0 MEPCRPPLGPSLQHLCPGPPLLRRLLLHPTRPVRVLPGPVPHAGPNTTTGLIVLEKAQHRWAQLCARLIIGGCVRYSVAAQFENAVERVVICCSGVFMEE KDLRSGVFRVADLEVAADILVPRRPEKLRELVGFTFYRPPPVWLLPSWLLNDFIQSMCGEYTEEKKELLRAIPKDRKLSEIPKISQQTLIIWGENDQVFP LELAYRMKRHLGENTQLAVIKNAGHAVNVEKPKEFLKLLKLFLVDSKFPSDTALNHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	1.4	0.9429
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	1.4	0.9511
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	2.2	0.9211
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	2.6	0.9195
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	3.2	0.9091
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	3.5	0.9243
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	4.6	0.8967
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	4.9	0.9232
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	5.1	0.8903
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10023478 [exp]	6.0	0.9114

Compare expression of checked genes

Lus10033451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.