Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34770 266 / 5e-90 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020925 [exp] 467 / 2e-167 AT1G34770 260 / 1e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164300 [exp] 326 / 2e-113 AT1G34770 322 / 2e-112 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01454 [flax] [poplar] MAGE MAGE family
Representative CDS sequence Show only first row Show all	>Lus10033452 pacid=23143357 polypeptide=Lus10033452 locus=Lus10033452.g ID=Lus10033452.BGIv1.0 annot-version=v1.0 ATGGCAATTGGCAAACGGGCTGGCTATTGGCCTTTGAATTCAGCTGCTAGTGGGCTTACCACACTGGAAATAAACACAAGCACTTCCCCCGCCACCAGCG CCCAACCGGCGGTGGTCCGACTGTTGGTGATTTTTCGTCTTTGCTCCCGCATTCTTCTCACCGCCGACTCCTTCCCTGAAAAGGATAAGCTCGTCGCTGA AGTGATCCGGCATGTGCTATTCAAGACTCACCACAACTCAGGGTGCCCCATTAAGAGGGAGGAGCTCACTCAGATTGTTACCAGAAACTACCATCAGCGC CTCCTTCCTGCTCTGGTCATCAAAGAGGCCATCGATAAGCTTTCCTCCATTTTCGGCTTGGAGATGAGGGAGCTTCAAAGGGCTCGTCTTGTCTCAAATA ACCATGCCCGCGGCTCTACTCAGCAAGGTTCTGCTGATGCCAAGTCCTACGTCGTTATGAGTAAACTGCCTGCTGATGTGTATAGGAAGTATGTTGAGGA CGTAGATACTGCACATCTCACTGGCATTTCTTTCGTTGTGATTAGTGTTGTGCAACTTTCCGGAGGCCAATTACCGGATGAGAATCTCTGGCATCAACTG ACCCGATTGGGGCTGCATGAAACAGATGGGTTCCATCCTGTCCTTGGAAATGTAAAGCAGGCAGTGGAGACACTTGTGCAACAAAGATATCTGCAAAAGG GCAAAGTTAGTGGTCCTGATGGTAGTACTATTAGTTATGAGCTTGCTGAGAGAGCATTAGATGGACCAGTAAGTGAGAAGATAAAGGAGTACATAGCCCA GATTGCAAAAGGTGGGTTGCTCGCTTAG
AA sequence Show only first row Show all	>Lus10033452 pacid=23143357 polypeptide=Lus10033452 locus=Lus10033452.g ID=Lus10033452.BGIv1.0 annot-version=v1.0 MAIGKRAGYWPLNSAASGLTTLEINTSTSPATSAQPAVVRLLVIFRLCSRILLTADSFPEKDKLVAEVIRHVLFKTHHNSGCPIKREELTQIVTRNYHQR LLPALVIKEAIDKLSSIFGLEMRELQRARLVSNNHARGSTQQGSADAKSYVVMSKLPADVYRKYVEDVDTAHLTGISFVVISVVQLSGGQLPDENLWHQL TRLGLHETDGFHPVLGNVKQAVETLVQQRYLQKGKVSGPDGSTISYELAERALDGPVSEKIKEYIAQIAKGGLLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34770			unknown protein		Lus10033452 [exp]	0	1
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	2.6	0.8399
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	3.2	0.8394
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	7.0	0.8055
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10025335 [exp]	7.3	0.8056
AT2G41705			camphor resistance CrcB family...		Lus10028072 [exp]	7.9	0.8163
AT4G26540			Leucine-rich repeat receptor-l...		Lus10005848 [exp]	10.1	0.7636
					Lus10005391 [exp]	11.3	0.8132
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	11.6	0.8101
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	14.7	0.7885
AT1G06750			P-loop containing nucleoside t...		Lus10021225 [exp]	15.4	0.7442

Compare expression of checked genes

Lus10033452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.