Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34750 369 / 8e-130 Protein phosphatase 2C family protein (.1) AT1G22280 367 / 7e-129 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G78200 308 / 1e-105 Protein phosphatase 2C family protein (.1.2) AT2G20630 301 / 3e-103 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 296 / 6e-101 Protein phosphatase 2C family protein (.1) AT3G15260 294 / 4e-100 Protein phosphatase 2C family protein (.1.2) AT2G34740 232 / 4e-75 Protein phosphatase 2C family protein (.1.2) AT4G31750 202 / 1e-63 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 201 / 5e-63 Protein phosphatase 2C family protein (.1) AT5G24940 202 / 4e-62 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020924 [exp] 469 / 3e-169 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 300 / 2e-102 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 298 / 7e-102 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 293 / 1e-99 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 291 / 9e-99 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 290 / 3e-98 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10005405 [exp] 251 / 2e-83 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10038455 [exp] 242 / 8e-80 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10009210 [exp] 237 / 6e-77 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164600 [exp] 399 / 2e-141 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 397 / 9e-141 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 303 / 1e-103 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 301 / 6e-103 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 300 / 2e-102 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.011G116700 [exp] 298 / 6e-102 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.018G150800 [exp] 293 / 1e-99 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 202 / 5e-64 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 199 / 7e-63 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 191 / 4e-59 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10033453 pacid=23143418 polypeptide=Lus10033453 locus=Lus10033453.g ID=Lus10033453.BGIv1.0 annot-version=v1.0 ATGGAAGATTATCATGTTGCGAAATTTGTACGGATTCAAGAGAACGAGTTAGGGCTTTTTGCTATCTATGATGGCCATTTGGGAGATAGTGTACCTGCAT ACTTACAGAAACATCTGTTTCCTAATATCTTGAAGGAGGATGAGTTCTGGGCGTTTCCAGACAGATCTATTTCGAAAGCCTATGAAAGGACAGACCAGGC TATACTCTCCCAAGCTTCCAATCTGGGACGAGGTGGCTCAACAGCTGTTACTGCAATCTTGATGAACGGCCAAAGGTTATTGGTAGCTAATGTTGGAGAC TCGAGAGCGGTTCTATCAAGAGGAGGTCAAGCAGTACAAATGAGCATCGATCATGAACCTAGCACCGAGAGAAGCAGCATAGAGGATAGGGGTGGCTTTG TTTCCAACATGCCAGGTTTTCTCGCATTCCGTTTACATCTATGCCCCGTGCAACTAATCCATTTAGTTTATGCACATTGTAAAGTTTTCTTTGGTGCACA TTTTGCAGGAGATGTTCCCAGAGTCAATGGTCAGCTAGCAGTTTCTCGTGCTTTCGGGGACAAAAGCCTCAAATCACACCTGAGATCAGATCCAGATGTC CGAGAAACCAACATCGACAACAGTACAGAGTTTCTTATCCTTGCAAGTGATGGCCTGTGGAAGGTTATGTCGAATCAGGAGGCGGTTGATATAGCGAAAA AGAGCAGAGACCCACAGAAAGCAGCAAGGCAGCTGACAACTGAGGCAGTCTACAGGGAGAGCAAGGACGATATATCATGTGTTGTTATTAGATTTAGGGT GTGA
AA sequence Show only first row Show all	>Lus10033453 pacid=23143418 polypeptide=Lus10033453 locus=Lus10033453.g ID=Lus10033453.BGIv1.0 annot-version=v1.0 MEDYHVAKFVRIQENELGLFAIYDGHLGDSVPAYLQKHLFPNILKEDEFWAFPDRSISKAYERTDQAILSQASNLGRGGSTAVTAILMNGQRLLVANVGD SRAVLSRGGQAVQMSIDHEPSTERSSIEDRGGFVSNMPGFLAFRLHLCPVQLIHLVYAHCKVFFGAHFAGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDV RETNIDNSTEFLILASDGLWKVMSNQEAVDIAKKSRDPQKAARQLTTEAVYRESKDDISCVVIRFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	0	1
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	1.7	0.9100
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	2.8	0.9199
AT5G16110			unknown protein		Lus10028474 [exp]	4.0	0.8859
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	4.0	0.9055
AT1G04555			unknown protein		Lus10014458 [exp]	5.4	0.9218
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	6.9	0.8887
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	9.5	0.8660
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	10.2	0.8946
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	16.0	0.8523
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	22.3	0.8878

Compare expression of checked genes

Lus10033453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.