Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05420 1437 / 0 DDB1A damaged DNA binding protein 1A (.1.2) AT4G21100 1407 / 0 DDB1B damaged DNA binding protein 1B (.1) AT3G55200 122 / 5e-28 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 122 / 5e-28 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G11960 81 / 3e-15 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) AT5G51660 74 / 4e-13 CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020922 [exp] 1484 / 0 AT4G21100 1606 / 0.0 damaged DNA binding protein 1B (.1) Lus10023443 [exp] 116 / 4e-26 AT3G55220 2237 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10040321 [exp] 103 / 5e-22 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10017295 [exp] 85 / 3e-16 AT3G11960 1633 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10013542 [exp] 81 / 5e-15 AT3G11960 1640 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10031692 [exp] 79 / 1e-14 AT5G51660 2142 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10031111 [exp] 79 / 2e-14 AT5G51660 2134 / 0.0 cleavage and polyadenylation specificity factor 160 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357900 [exp] 1471 / 0 AT4G05420 1995 / 0.0 damaged DNA binding protein 1A (.1.2) Potri.008G048900 [exp] 126 / 4e-29 AT3G55200 2254 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.010G212100 [exp] 124 / 1e-28 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.012G022700 [exp] 86 / 1e-16 AT5G51660 2117 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Potri.006G197200 [exp] 75 / 2e-13 AT3G11960 1679 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03178 [flax] [poplar] CPSF_A CPSF A subunit region
Representative CDS sequence Show only first row Show all	>Lus10033455 pacid=23143309 polypeptide=Lus10033455 locus=Lus10033455.g ID=Lus10033455.BGIv1.0 annot-version=v1.0 ATGAGTGTATGGAACTACGTGGTCACCGCTCATAAGCCCACCAATGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCGCAGGAGCTCAATCTCATCA TAGCGAAATGTACACGTATTGAAATCCACCTACTTACTCCACAGGGATTGCAGCCCTTGTTGGACGTCCCTATTTATGGAAGAATTGCCACACTTGAGCT TTTTCGTCCTCATGGTGAAGCACAAGACTTTCTGTTCATCGCCACTGAGAGATACAAGTTTTGTGTTCTTCAGTGGGATTCTGAAGCATCCGAGCTTGTT ACTAGAGCAATGGGGGATGTATCTGACCGCATAGGCCGTCCAACTGACAATGCTCAGATAGGGATAATTGATCCTGATTGTCGGCTGATAGGACTGCACT TATACGATGGTCTGTTTAAGGTTATTCCATTCGACAACAAAGGGCAGCTCAAAGAGGCTTTCAATATAAGTGCAAATGCCTTTAAAGCAATCCCTATTAG ACCGGCTATCACAAAAGCATATGGGAGAGTTGATGCTGATGGTTCTAGATATTTGCTTGGTGACCATGCTGGTCTACTCCATCTCCTTGTTATAACTCAT GAGAAAGAGAAGGTCACTGGATTGAAGATTGAGCTTTTGGGAGAGACTTCTGTTCCATCAACCATATCATACCTTGATAATGCATTTGTCTTCATTGGTT CTAGTTTTGGTGATTCACAGGTCCTAACCATCTACCGTGGTGCAATGCAGCTTATAAAGCTCAATTTACAACCTGATAACAGAGGTTCATATGTGGAAGT TCTGGAAAGGTATGTCAATCTGGGACCCATAGTGGACTTTTGCGTGGTGGATCTTGAAAGGCAAGGGCAGGGTCAGGTTGTAACATGTTCTGGAGCTTAC AAGGATGGTTCGCTTCGTATAGTCCGGAATGGAATAGGAATCAATGAACAGGCATCTGTAGAGCTTCAAGGCATTAAAGGAATGTGGTCTTTGAGATCTT CCACCAACGATCCATTTGACACCTTCCTTGTTGTCAGTTTTATTAGTGAGACTAGAGTTCTGGCAATGAACCTTGAGGATGAGTTGGAAGAAACTGAAAT TGAAGGTTTTAATTCACAAGTGCAGACTTTGTTCTGTCATTATGCCATCCACAATCAGCTTGTGCAAGTTACTTCAAGCTCAGTCATACTAGTCAGTTCC ACAACGAGAGAACGTCGGTGGGAGTGGAGTGCTCCTTCAGGCCATTCTATTAATGTTGCTACTGCTAATGCTAGCCAGGTTTTATTGGCAACTGGTGGCG GCAAATTAGTTTACCTGGAAATTGGTGATGGGATGTTGACTGAGATAAAGCACACACAGCTGGAATATGAAATATCATGCCTTGATATTAATCCCATTGG TGAAAATCCAAATCACAGCCAATTGGCTGTCGTTGGAATGTGGACAGACATAAGTGTCAGGATATTTTCTCTGCCGGACCTAAGTATTGTGAGAAAAGAG TACCTGGGAGGAGAAATAATTCCACGTTCGGTGCTTCTATGTTCTTTTGAAGGGATATCTTACTTGCTATGTGCCCTTGGAGATGGTCATCTCTTAAACT TTCAATTGAACTTGAGCAATGGCGAGTTGGCGGATAGGAAAAAGGTATCCTTGGGAACGCAGCCTATAACACTTCGAACTTTCTCATCAAAGAATGCGAC GCATGTATTCGCTGCATCAGATAGGCCAACTGTGATATACAGTAGTAACAAGAAACTATTGTACAGCAATGTAAACTTAAAAGAAGTCAGCCATATGTGT CCTTTCAACTCTGCTGCTTTCCCAGACAGCCTTGCTATTGCGAAAGAAGGAGAACTTACCATTGGCACTATAGATGAGATCCAAAAGCTTCATATCCGGA CAATTCCACTGGGAGAGCATGCTAGGAGAATCTGCCATCAGGAACAGTCTCGAACGTTTGCCATTTGTAGCTTGAAGCACCAAACAAGTACAGAAGAATC AGAAACTCACTTTGTTCGCTTATTAGACGATCAAACCTTTGAATCTCTATCTGCCTACCAACTGGATCCATTTGAGTACGGGTGTTCCTTGCTTAGCTGC TCCTTCTCAGATGACCTCAATGTGTACTATTGTGTTGGGACGGCATATGTTCTGCCAGAAGAAAATGAGCCTACAAAGGGAAGGATTTTAGTGTTCATTA TGGAAGACGGGAAGTTGCAGCTTATCACTGAGAAGGAAACGAAGGGGGCTGTTTATACTTTGAATGCTTTTAACGGAAAACTGCTTGCTGCCATAAATCA GAAAATCCAACTATATAAATGGATGCTTAGGGATGATGGAAGCCGTGAATTGCAGTCAGAGTGTGGACATCATGGACATATACTTGCGCTCTATGTGCAA ACTCGTGGAGATTTCATCGTTGTCGGTGATCTGATGAAGTCAATTTCCTTGCTAATTTATAAGCATGAAGAAGGTGCCATTGAAGAGCGAGCTCGGGACT ACAATGCAAACTGGATGTCGGCGGTTGAAATCCTCGACGATGACATCTACATTGGTTCGGAGAACAACTACAACCTATTTACAGTGCGGAAGAACAGCGA AGGTGCCACAGACGAGGAGCGAGGCCGGCTGGAGGTTGTTGGGGAATATCACCTGGGCGAATTCGTGAATCGATTCAGGCATGGATCGCTGGTGATGCGT CTGCCCGATTCAGACGTGGGACAGATTCCAACTGCGATATTCGGTACCATCAACGGTGTGATTGGGGTGATTGCTTCACTTCCTCATGACCAGTACCTGT TCCTGGAGAAGCTCCAGACCAACCTAAGGAAGGTGATAAAGGGAGTTGGAGGATTAAGCCACGAGCAGTGGAGATCGTTTAACAACGAGAAGAGAACCGC AGATGCCAAGAACTTTTTGGACGGAGATCTAATCGAGTCGTTCCTTGATCTGAGCAAGATTAGAATGGATGAAATCTCCAAGGGAATGGGTGTCTCGGTG GAAGAACTCTGTAAGAGAGTCGAAGAGCTGACAAGGCTTCACTGA
AA sequence Show only first row Show all	>Lus10033455 pacid=23143309 polypeptide=Lus10033455 locus=Lus10033455.g ID=Lus10033455.BGIv1.0 annot-version=v1.0 MSVWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPLLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDSEASELV TRAMGDVSDRIGRPTDNAQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNISANAFKAIPIRPAITKAYGRVDADGSRYLLGDHAGLLHLLVITH EKEKVTGLKIELLGETSVPSTISYLDNAFVFIGSSFGDSQVLTIYRGAMQLIKLNLQPDNRGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAY KDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTNDPFDTFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHYAIHNQLVQVTSSSVILVSS TTRERRWEWSAPSGHSINVATANASQVLLATGGGKLVYLEIGDGMLTEIKHTQLEYEISCLDINPIGENPNHSQLAVVGMWTDISVRIFSLPDLSIVRKE YLGGEIIPRSVLLCSFEGISYLLCALGDGHLLNFQLNLSNGELADRKKVSLGTQPITLRTFSSKNATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMC PFNSAAFPDSLAIAKEGELTIGTIDEIQKLHIRTIPLGEHARRICHQEQSRTFAICSLKHQTSTEESETHFVRLLDDQTFESLSAYQLDPFEYGCSLLSC SFSDDLNVYYCVGTAYVLPEENEPTKGRILVFIMEDGKLQLITEKETKGAVYTLNAFNGKLLAAINQKIQLYKWMLRDDGSRELQSECGHHGHILALYVQ TRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYIGSENNYNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR LPDSDVGQIPTAIFGTINGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFNNEKRTADAKNFLDGDLIESFLDLSKIRMDEISKGMGVSV EELCKRVEELTRLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	0	1
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	1.4	0.8996
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	5.7	0.8622
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	6.3	0.8534
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	8.7	0.8786
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	9.2	0.8511
AT4G10320			tRNA synthetase class I (I, L,...		Lus10041706 [exp]	9.6	0.8799
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	10.8	0.8507
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	11.0	0.8865
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	11.7	0.8348
AT5G07940			unknown protein		Lus10021621 [exp]	12.2	0.8771

Compare expression of checked genes

Lus10033455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.