Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78150 327 / 7e-113 unknown protein AT1G35780 310 / 3e-106 unknown protein AT4G39860 290 / 5e-98 unknown protein AT2G22270 182 / 1e-55 unknown protein AT2G22260 41 / 0.0005 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020921 [exp] 491 / 4e-177 AT1G35780 367 / 1e-128 unknown protein Lus10041695 [exp] 304 / 4e-103 AT4G39860 399 / 1e-140 unknown protein Lus10024053 [exp] 300 / 4e-95 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10009931 [exp] 87 / 7e-22 AT1G35780 107 / 2e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G165500 [exp] 395 / 1e-139 AT1G35780 357 / 2e-124 unknown protein Potri.002G095300 [exp] 395 / 2e-139 AT1G35780 364 / 2e-127 unknown protein Potri.005G076000 [exp] 310 / 5e-106 AT4G39860 354 / 3e-123 unknown protein Potri.007G092400 [exp] 291 / 2e-98 AT4G39860 384 / 4e-135 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033456 pacid=23143370 polypeptide=Lus10033456 locus=Lus10033456.g ID=Lus10033456.BGIv1.0 annot-version=v1.0 ATGGAGAGGAACACAGTGGTGAGGAAGCCCCACAATTCCACTGCAGATCTGCTCACTTGGTCCGAGACTCCTCCTCCTGAATCCCCCTCGCTCGCCTCCG CTCCTCGCTCCGCCGCAAGATCCCACCAGCCGTCGGATGGAATCAGCAAGGTTGTGTTTGGAGGTCAGGTGACTGACGAAGAATCTGTCAGTCTTAACAA ACGGAAGCCATGTTCTGGATACAAAATGAAAGAAATGACAGGCAGTGGCATTTTCACTGCTAATGGAGAAGACGAGGAAGACGAAACTGGAAATGGGAAC CTCACCCCTAATGCAAGAACGGGGATAAGAATGTATCAGCAAGCTGTTGCTGGAATCAGTCATATTTCTTTTGGAGAGGGAGAGAGTGTCTCCCCGAAAA AACCGGCTTCCTTGCCCGAGGTGGCCAAGCAGCGTGAGCTATGCGGTACATTGGAAACCGAGGAAGAGTTAGAGGCCAGGCTGAAGAAACAGCTTTCTGA TGCCAAATGCAAAGAGCTCAGTGGACACGACATCTTCGCTCCTCCACCTGAAATTTTGCCTCGACCAACCAGTGTCAGGGCTTTGGCATTGAAGGAAAGC ATAGAGTTGGGTGAACCAGCTCTACGTGATCCTGCTAAAGGCCAGACTTCATCGGAAGACAGTGCGATGAAGACTGCAAAGAAAATATACGACAAGAAAT TCTCCGAGCTCTCGGGAAACGACATCTTCAAAGGCGATGTCCCCGCATCATCAGCGGAGAAGCCAATAAGTGACGCGAAATTGAGAGAGATCAGCGGGAA CAACATATTTGCAGATGGCAAGGCGGAGCATCGAGACTACTTGGGTGGCGTACGTAAACCTCCTGGTGGGGAGAGCAGCATTGCCTTGGTTTAA
AA sequence Show only first row Show all	>Lus10033456 pacid=23143370 polypeptide=Lus10033456 locus=Lus10033456.g ID=Lus10033456.BGIv1.0 annot-version=v1.0 MERNTVVRKPHNSTADLLTWSETPPPESPSLASAPRSAARSHQPSDGISKVVFGGQVTDEESVSLNKRKPCSGYKMKEMTGSGIFTANGEDEEDETGNGN LTPNARTGIRMYQQAVAGISHISFGEGESVSPKKPASLPEVAKQRELCGTLETEEELEARLKKQLSDAKCKELSGHDIFAPPPEILPRPTSVRALALKES IELGEPALRDPAKGQTSSEDSAMKTAKKIYDKKFSELSGNDIFKGDVPASSAEKPISDAKLREISGNNIFADGKAEHRDYLGGVRKPPGGESSIALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35780			unknown protein		Lus10033456 [exp]	0	1
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	2.4	0.8262
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	3.7	0.8659
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	5.7	0.8226
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	6.0	0.7981
AT5G40740			unknown protein		Lus10014617 [exp]	6.2	0.7860
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	6.3	0.8314
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10034299 [exp]	11.0	0.7748
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	12.0	0.8187
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10035126 [exp]	13.2	0.7506
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	14.9	0.8062

Compare expression of checked genes

Lus10033456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.