Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49142 153 / 7e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 152 / 2e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 147 / 1e-41 unknown protein AT1G20230 147 / 2e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 145 / 3e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40410 144 / 5e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 140 / 4e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G29760 142 / 7e-40 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 142 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 141 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020918 [exp] 298 / 2e-99 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 149 / 2e-42 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 143 / 2e-40 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 140 / 4e-40 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005638 [exp] 135 / 6e-40 AT5G40410 305 / 9e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002553 [exp] 136 / 8e-40 AT2G22410 365 / 3e-122 SLOW GROWTH 1 (.1) Lus10033026 [exp] 142 / 9e-40 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 142 / 1e-39 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 141 / 1e-39 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217900 [exp] 202 / 2e-62 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.005G005700 [exp] 152 / 1e-43 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 152 / 1e-43 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 148 / 3e-42 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 147 / 5e-42 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 147 / 6e-42 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G021300 [exp] 147 / 1e-41 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G135600 [exp] 145 / 4e-41 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G044700 [exp] 144 / 8e-41 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 144 / 1e-40 AT3G22690 1050 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033457 pacid=23143272 polypeptide=Lus10033457 locus=Lus10033457.g ID=Lus10033457.BGIv1.0 annot-version=v1.0 ATGGAACACTATGCTTGTATGATTGATCTGCTTGGTCGGGCTGGGCTTCTAGAAGATGCATATAAGCTGATAAGCTGGATGCCAATGGCACCGGGGCAAG CTGCCTGGGGTGCCCTTTTGAATGCTTGCAGGATGCATGGGAATATTGAACTGGCCAAGCTTGCTGCTCATAAACTTTTTGAGTTAGATCCTGAAGACAG TGGTATATATGTTTTGTTAGCAACTGTTGTTTATGCCAGGGACAAGAGATGGGGCGATGTGAGTATGGTAAGAAACATAATGAAGGAAAAGGGCGTTAAG AAAACTCCCGGTCGAAGCTTGATAGAGATTGAAGGGGATTTCCATGAGTTCCTAGCTGGAGACACTTCACATCCACAGTCTCATGGAATTCGTCAAGCTT TGAAGGACATATTTATGTTGTCGAAAATGGAAGATGCTGACGGCAATGAGCCTCTAAATTACATTTTATAA
AA sequence Show only first row Show all	>Lus10033457 pacid=23143272 polypeptide=Lus10033457 locus=Lus10033457.g ID=Lus10033457.BGIv1.0 annot-version=v1.0 MEHYACMIDLLGRAGLLEDAYKLISWMPMAPGQAAWGALLNACRMHGNIELAKLAAHKLFELDPEDSGIYVLLATVVYARDKRWGDVSMVRNIMKEKGVK KTPGRSLIEIEGDFHEFLAGDTSHPQSHGIRQALKDIFMLSKMEDADGNEPLNYIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10033457 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	24.3	0.6890
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	25.9	0.6851
AT5G57300			S-adenosyl-L-methionine-depend...		Lus10037553 [exp]	83.8	0.5662
AT1G02420			Pentatricopeptide repeat (PPR)...		Lus10026306 [exp]	173.5	0.5782
AT3G26950			unknown protein		Lus10035181 [exp]	259.8	0.5668

Compare expression of checked genes

Lus10033457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.