Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 221 / 2e-65 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 219 / 8e-65 SLO1 SLOW GROWTH 1 (.1) AT4G18840 201 / 3e-59 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G15930 202 / 2e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G37570 196 / 3e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G05240 189 / 1e-54 MEF19 mitochondrial editing factor 19 (.1) AT2G44880 188 / 2e-54 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G08070 185 / 5e-52 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 176 / 5e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G38010 174 / 6e-49 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020918 [exp] 674 / 0 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 217 / 1e-63 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 211 / 2e-61 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 194 / 2e-55 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 191 / 4e-55 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 193 / 6e-55 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 191 / 7e-55 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027455 [exp] 187 / 8e-54 AT3G29230 324 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027408 [exp] 186 / 1e-53 AT2G29760 405 / 5e-133 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217900 [exp] 422 / 3e-143 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.009G044700 [exp] 241 / 5e-73 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 233 / 2e-70 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 223 / 7e-66 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 209 / 2e-61 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.008G121400 [exp] 199 / 2e-58 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 198 / 4e-58 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G087100 [exp] 198 / 1e-57 AT3G29230 368 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 196 / 2e-57 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G135600 [exp] 195 / 1e-56 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033458 pacid=23143491 polypeptide=Lus10033458 locus=Lus10033458.g ID=Lus10033458.BGIv1.0 annot-version=v1.0 ATGCTCCAACTTAAGCAAATCCAAGCTCTCATGACCACCACGAGCCTCATTACTCATAATTTCCCCATCACCCGTGCATTGGCTTTTTGTGCCTTAGCTG ATGCTGGAGATATCGACCATGCGCATGCTCTGTTCATCAAGATTCAGAATCCTAATACCTACATGTGGAACACCATAATTAGAGGTTACGCCAAACGTAA AATTCCCAGGATTGGGTTTTCTATCTTTTGCCGCAGGCTTCTGGTACGGGCAGCAGCCATGGACGCCAGGACCTTTGCCTCTACGCTCAAACTCTGCGAG CAATTCTCTACTTCTTTTCGTGGGAAATCGGTGCATTCATCGGTTTGGAAAACAGGGTTTTCTGGCTCTTTGTGGGTGGGTAATGTATTAATTCATTTTT ATGGTGCTCATCGGTTGCTAGAATTATCAGCCAAGGTGTTCGATGAAATCCCTGCTAAGGATGCTGTTTCTTGGACTTCCATAATTGATGAGTATGCAGC TACTAATTGCTACACCGAAGCCCTCAAGCATTTCGATTGCATGATTTCTGCTGGTAAATGTATCAACTTTACAATGAATTTGATGAATGCCGTTTTAAAT ATATATATCAAGTGCGGTTCCATGGTTGATGCTAACGAGTTTTTCGAGAAGATGGAAGTTAAAGATGTATTCTCTTGGACTAGCATGGTCAATGGATATG CCAAACGCGGTGAGCTAGAATCAGCGAGGCTGCTATTGGATGAGATGCCTCAAAGGAATGTAGTTTCTTGGAATACCATGATATCCGGGTATTCCCAAAC CAATAATCCAAAGGAAGCTTTAGATTTATTTCACGTCATGATAGAAGCTGGATTAGTTCCAACTGAGGATACATTAGTCTGTGTACTCTCTGCCTGTGGT CAACTGGGTTCTGTGGATTTGGGTCAGTGGATTCATCTTCGCTACATAGACAATAAACTGATTAAGAGCAGTGTAATCATAGCTAATGCATTTATTCACA TGTATGCTAAATGTGGGTGGATAGATGCAGCTGCTAGCATTTTCCGCAGTATGCCAGAAAGATTTAGCTTCTTGGAATTCAATAATTGCAGCATATTCTG TTCATGGAGACCCCAAACAAGCTCTCTGCCTTTTCCACCAGATGCAACTCTCCAAGTTCAAACCTGA
AA sequence Show only first row Show all	>Lus10033458 pacid=23143491 polypeptide=Lus10033458 locus=Lus10033458.g ID=Lus10033458.BGIv1.0 annot-version=v1.0 MLQLKQIQALMTTTSLITHNFPITRALAFCALADAGDIDHAHALFIKIQNPNTYMWNTIIRGYAKRKIPRIGFSIFCRRLLVRAAAMDARTFASTLKLCE QFSTSFRGKSVHSSVWKTGFSGSLWVGNVLIHFYGAHRLLELSAKVFDEIPAKDAVSWTSIIDEYAATNCYTEALKHFDCMISAGKCINFTMNLMNAVLN IYIKCGSMVDANEFFEKMEVKDVFSWTSMVNGYAKRGELESARLLLDEMPQRNVVSWNTMISGYSQTNNPKEALDLFHVMIEAGLVPTEDTLVCVLSACG QLGSVDLGQWIHLRYIDNKLIKSSVIIANAFIHMYAKCGWIDAAASIFRSMPERFSFLEFNNCSIFCSWRPQTSSLPFPPDATLQVQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033458 [exp]	0	1
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	4.0	0.9075
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	8.4	0.9254
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	8.7	0.8934
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	11.6	0.9132
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	13.8	0.9252
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030865 [exp]	14.4	0.8418
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	14.7	0.8832
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	18.7	0.9170
AT1G27170			transmembrane receptors;ATP bi...		Lus10004905 [exp]	18.9	0.8471
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	19.4	0.9232

Compare expression of checked genes

Lus10033458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.