Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58230 714 / 0 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 403 / 5e-139 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 401 / 2e-138 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 192 / 5e-56 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 170 / 5e-48 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G19540 124 / 3e-31 Transducin family protein / WD-40 repeat family protein (.1) AT1G29260 83 / 2e-17 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G67320 76 / 1e-14 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G32950 71 / 7e-13 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G63460 68 / 6e-12 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033460 [exp] 766 / 0 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 765 / 0 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 689 / 0 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 417 / 1e-144 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 410 / 3e-142 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027632 [exp] 166 / 2e-46 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 119 / 1e-29 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 107 / 3e-25 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 107 / 3e-25 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216200 [exp] 728 / 0 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 726 / 0 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 422 / 7e-147 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 418 / 5e-145 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 177 / 7e-51 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 174 / 2e-49 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 171 / 2e-48 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 124 / 2e-31 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 115 / 2e-28 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 90 / 7e-20 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12265 [flax] [poplar] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Lus10033459 pacid=23143524 polypeptide=Lus10033459 locus=Lus10033459.g ID=Lus10033459.BGIv1.0 annot-version=v1.0 ATGGGGAAAGACGACGAAGAGATGAGAGGGGAGATGGAGGAAAGGCTTATCAACGAAGAGTACAAAATATGGAAAAAGAACACTCCTTTCCTCTACGACC TCGTCATCACTCACGCCCTCGAATGGCCTTCGCTTTCCGTCGAATGGTTGCCGGATCGCGACGAGCCTCCGGGCAAAGACTACTCCGTCCAGAAGATGAT CCTCGGCACCCACACCTCCGAAAACGAGCCTAATTACCTCATGCTCGCTCAGGTTCAGCTTCCCTCAGAAGGCGCCGAGAATGACTCCCGCAATTACGAC GACGACCTCTCTAATTCGGGCGGCTTTGGTGCTGCCAGCGGCAAGGTACAAATAGTTCAGCAGATAAATCACGAGGGAGAGGTGAACAGAGCTCGCTACA TGCCTCAAAACCCTTTTATAATTGCCACCAAGACCGTCAGCGCCGAAGTCTACGTCTTTGACTATAGCAAGCACCCTTCTAAACCTCCACTGGACGGAGC TTGCAGTCCAGATTTGAGGTTGAGTGGACACAACACTGAAGGTTATGGTCTTTCCTGGAGCACGTTGAAGCAAGGCCATTTACTCAGCGGTTCCGACGAT GCACAGATTTGCTTGTGGGATATCAATGCTACTCCTAAGAATAAGACTCTTGACGCCACCCAGATTTTCAAGGTTCATGAAGGAGTTGTGGAAGATGTAG CGTGGCATCTGAGGCATGAGTACTTATTTGGTTCTGTGGGGGATGATCAGTACCTACTTATATGGGATCTTCGCAGCCCCGCTGTGACCAAACCTGTCCA GTCTGTTGTTGCTCATCAAAGTGAGGTGAACTGTTTGGCCTTCAATCCTTTCAATGAATGGGTTGTGGCAACTGGATCAACTGATAAGACCGTCAAATTG TTTGACTTACGCAAGATCAGTACTGCACTGCACACATTGGATTGTCACAAAGAAGAAGTCTTCCAAGTTGGCTGGAATCCAAAGAATGAGACCATCCTAG CTTCTTGTTGCCTTGGAAGGAGGCTCATGGTTTGGGATCTTAGCAGGATCGATGAGCAGCAGACTCTCGAGGATGCGGAAGATGGTCCGCCGGAGTTGCT CTTCATTCATGGAGGTCACACGAGTAAAATATCAGATTTTTCGGGGAATCCGTGTGAAGACTGGTTTGTAGCGAGTGTGGCTTAA
AA sequence Show only first row Show all	>Lus10033459 pacid=23143524 polypeptide=Lus10033459 locus=Lus10033459.g ID=Lus10033459.BGIv1.0 annot-version=v1.0 MGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLSVEWLPDRDEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPSEGAENDSRNYD DDLSNSGGFGAASGKVQIVQQINHEGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLSGHNTEGYGLSWSTLKQGHLLSGSDD AQICLWDINATPKNKTLDATQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPAVTKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL FDLRKISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEQQTLEDAEDGPPELLFIHGGHTSKISDFSGNPCEDWFVASVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033459 [exp]	0	1
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033460 [exp]	1.0	0.9368
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	6.0	0.9196
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	6.0	0.9027
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	6.2	0.9056
AT1G53050			Protein kinase superfamily pro...		Lus10025773 [exp]	15.1	0.8895
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	16.0	0.9050
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	16.2	0.8991
AT3G52110			unknown protein		Lus10029522 [exp]	18.3	0.8886
AT1G32420			F-box and associated interacti...		Lus10018969 [exp]	19.4	0.8707
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	23.3	0.9049

Compare expression of checked genes

Lus10033459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.