Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58230 751 / 0 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 438 / 2e-152 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 426 / 2e-147 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 209 / 2e-62 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 189 / 7e-55 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G19540 126 / 7e-32 Transducin family protein / WD-40 repeat family protein (.1) AT1G29260 82 / 5e-17 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G67320 81 / 5e-16 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G32950 72 / 2e-13 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G18830 69 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020916 [exp] 804 / 0 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 735 / 0 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 718 / 0 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 448 / 1e-156 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 439 / 9e-153 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027632 [exp] 181 / 8e-52 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 139 / 2e-36 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 111 / 1e-26 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 111 / 2e-26 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216200 [exp] 768 / 0 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 767 / 0 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 459 / 1e-160 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 452 / 4e-158 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 199 / 2e-58 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 194 / 8e-57 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 191 / 2e-55 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 127 / 4e-32 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 118 / 6e-29 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 89 / 1e-19 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12265 [flax] [poplar] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Lus10033460 pacid=23143497 polypeptide=Lus10033460 locus=Lus10033460.g ID=Lus10033460.BGIv1.0 annot-version=v1.0 ATGGGGAAGGACGACGAGGAGATGAGAGGGGAGATGGAGGAAAGGCTTATCAACGAGGAGTACAAAATATGGAAGAAGAACACTCCTTTCCTCTACGACC TCGTCATCACTCACGCCCTCGAATGGCCTTCCCTTTCCGTTGAATGGTTGCCGGATCGTGATGAGCCTCCCGGCAAGGACTACTCCGTCCAGAAGATGAT CCTCGGCACCCACACTTCGGAAAACGAGCCTAATTACCTCATGCTCGCACAGGTTCAGCTTCCCTTAGAGGACGCTGAGAATGACAACCGCAATTACAAC GACGACCGCGCTAATTCGGGCGGTTTTGGTGCTGCCAGCGGCAAGGTACAAATAGTTCAGCAGATAAATCACGAGGGAGAGGTGAACAGAGCTCGCTACA TGCCTCAAAACCCTTTTATAATTGCCACCAAGACCGTCAGCGCCGAAGTCTACGTCTTTGACTACAGCAAGCATCCTTCTAAGCCTCCATTGGACGGAGC TTGCAGTCCGGATTTGAGGTTGAGCGGCCACAACACTGAAGGCTATGGTCTGTCTTGGAGCACGTTCAAGCAAGGCCATTTACTCAGCGGTTCCGACGAT GCACAGATTTGCTTGTGGGATATCAATGCTACTCCTAAGAATAAGACTCTTGACGCCACCCAGATTTTCAAGGTTCATGAAGGAGTTGTGGAAGATGTAG CGTGGCATCTGAGGCATGAGTACTTATTTGGTTCTGTGGGGGATGATCAGTACCTACTTATATGGGATATTCGCAGCCCAGCTGTAACTAAACCTGTCCA GTCTGTTGTTGCTCATCAAAGTGAGGTGAACTGTTTGGCCTTCAATCCATTCAATGAATGGGTTGTGGCAACTGGATCAACTGATAAGACCGTCAAATTG TTTGACTTGCGCAAGATCAGTACTGCACTGCACACATTCGATTGTCACAAAGAAGAAGTCTTCCAAGTTGGCTGGAATCCAAAGAATGAGACCATCCTAG CTTCTTGTTGCCTTGGAAGGAGGCTCATGGTTTGGGATCTTAGCAGGATCGATGAGCAGCAGACTCCCGAGGATGCGGAAGATGGTCCGCCGGAGCTGCT CTTCATTCATGGAGGTCACACGAGTAAAATATCAGATTTTTCGTGGAATCCGTGTGAAGACTGGGTTGTAGCGAGTGTGGCTGAAGATAACATCCTTCAG ATATGGCAGATGGCTGAGAACATATACCATGATGAAGATGATTTACCAGTTGATGATTCTACCAAAGCTCCTTAG
AA sequence Show only first row Show all	>Lus10033460 pacid=23143497 polypeptide=Lus10033460 locus=Lus10033460.g ID=Lus10033460.BGIv1.0 annot-version=v1.0 MGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLSVEWLPDRDEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDNRNYN DDRANSGGFGAASGKVQIVQQINHEGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLSGHNTEGYGLSWSTFKQGHLLSGSDD AQICLWDINATPKNKTLDATQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDIRSPAVTKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL FDLRKISTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEQQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQ IWQMAENIYHDEDDLPVDDSTKAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033460 [exp]	0	1
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033459 [exp]	1.0	0.9368
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	9.2	0.9283
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	12.0	0.9195
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	14.0	0.9189
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	14.5	0.9167
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	16.7	0.9174
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	17.1	0.9241
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	22.0	0.9206
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	22.4	0.9209
AT3G22520			unknown protein		Lus10041202 [exp]	26.5	0.8988

Compare expression of checked genes

Lus10033460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.