Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30100 1583 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 1484 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 342 / 1e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 275 / 5e-78 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 195 / 1e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G37030 185 / 1e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 185 / 1e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 184 / 1e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 183 / 5e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 177 / 4e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020914 [exp] 1603 / 0 AT4G30100 903 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 347 / 2e-98 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 347 / 2e-98 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 259 / 1e-72 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 258 / 5e-72 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003960 [exp] 224 / 2e-60 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035774 [exp] 201 / 1e-52 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037353 [exp] 200 / 3e-52 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035776 [exp] 201 / 6e-52 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168300 [exp] 1777 / 0 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 1730 / 0 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 310 / 1e-86 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G056700 [exp] 263 / 1e-73 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077600 [exp] 200 / 4e-52 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077500 [exp] 199 / 1e-51 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 199 / 2e-51 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140501 [exp] 197 / 3e-51 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143450 [exp] 197 / 1e-50 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 196 / 2e-50 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033462 pacid=23143392 polypeptide=Lus10033462 locus=Lus10033462.g ID=Lus10033462.BGIv1.0 annot-version=v1.0 ATGGGTTCTAGAGGGATAATATTTGATCTTAATGAACCTGCTGCCGAGGATGATGAGACTGGTAATGTCTCTTCTCAGCCACAGATATCACCGCTCTCTT CAACTTCACAGACTCCTGCATCGGTAAATTCATCAACAGCTGCACAAGCAACAAAGGATAACCTTGCTTTCTCACATCAATCATCGATGTCAGGTTTTCA GCCATTTGTTCGACCGAAGGTTGCCAATGATGAAGCGGTCCTTGCACAGAACACAGCACTTGATCGGATTTCTAAGTTTGAGCCTCCATTGAATTTAAAT AATGGTTATGGCAGGAAAACACAACCCCAGTTAGCTTCTGGTTCTACAGCATCTCAACCTGCCGAACGAGAAGAAGGCGAGTGGGTGGATACTGACGGTT CTGCTGGAAGTATTCAACATTTAGACAGCAATGGTAATCGTGATTCATCAAGTTGTCCCGAAGCAAAAGTAGTTGCCTCGAGACAAAGAGAAGTGAAAGG CTCTGAAGCGAGTCATGCACTTAGGCTTGCAAATCTTCCAGTAAAGAGGAAAATAGATCACCATAAAGAAGCAATGCTAGGAAAGATGCGCAATAGACAA ACTATGTTGATTAATATTGATGAGGTTAAGCAAGCTGAAACCGTGAAAACCCTGACCCCAAAGAGACAGCTGACTTCGGCCCGAACAAAAGAAAATAAGA CACTTCCTTTGGCTGCTGGAGAGAGGTACAATCATTCTATATTGAAGGATCAGAAACAGGTTGAGTTACCATCCAGTGACGTTGGTACTAGTCTGGAGTT TTCTCAAGCCAAATCTGAAAGCAATGGTGAGATAAATTCATCTCAGGTAGATAAGCACAGGAGGCTTAATGGCGATGCTGACTCCTCATCAGATACACAA CTTCCTCCTGTTACAAGACAGAGTTCATGGAAGCAACCAATTGATATGAGACATCAGAAGAATTTCCAAATGTCCAATAGGAGGGCACCTTCAAACAACC AGAACCCTTTGGATAAAAAACTGGGGGGCAAAAAGAGTGTTCATCTTAAGAAGACAGCTCTAACAGGTTCTTCTTATCATGATACCTCAGTTGAACGTCT TATCCGAGAGGTGACAAATGAAAAGTTTTGGCACCATCCAGAGGATTCTGAGCTTCAGTGTGTTCCGGGCCAGTTTGAATCAAGCGGCGATTATGTCAGT GTGTTTGAACCTTTGCTTTTTGAGGAATGTCGAGCACAACTTTATAGCACATGGGAGGAGTTATCGGAAACGAATTCGCACATTATGGTGCGGGTAAAAA ATGTTGAAAGGCGAGAGAGAGGATGGTACGATGTGATTGTCCTCTCGGTGAATGATTGCAAGTGGAATTTCAAGGAGGGTGATGTTGCCGTTCTCTCAAA TCCAAAGCCTGGGACAGTTAGATCAAAGAGGAACTTGGGCTCATCTAGTGAAGATGGTGATGAGCCTGATAAGCTTGATCGTGTGGCTGGCACTGTTAGA AGGCATATTCCTCTCGACAATCGTGATCCTCCTGGTGCAACCCTCCATTTTTACGTTGGAGACTCGTATGATCCATATGGCAAGGTTGATGATGATCATA TCCTCCGGAAACTTCAACATCGGAGCACTTGGTACTTGACTGTACTTGGTTCTCTCGCAACCACCCAGCGAGAGTATGTTGCCTTGCATGCATTTTGCCG ACTCAACTCACAGATGCAACACGCTATCTTAAAGCCCAGTCGAGAGCAATTCCCAAACTATGAGCAGCAGACACCAACTATGCCTGATTGCTTCACCCCT AATTTCACTGATCATTTGCATAGATCATTCAATGGCCCTCAGCTGTCGGCAATCCAATGGGCTGCCATGCATACAGCTGCTGGCACAAACAGCGGTGTAA CGAAGAGACAAGATCCATGGCCTTTTACTCTTGTGCAAGGGCCGCCTGGAACAGGTAAGACACATACAGTGTGGGGGATGCTCAATGTGATCCATCTGGT TCAGTATCAGCACTACTACACATCTTTGCTTAAAAAGTTAGCACCGCACAGTTATAAGGCAGCCAGTGAGAATAATTCTGAAAGTATTGTTGTTGGTTCA ATTGATGAAGTTCTTCATAATATGGACCAGAATCTTTTTCGTTCTCTTTCAAAACTCTGCCCAAAGCCCAGAATGTTGGTCTGTGCTCCTTCTAATGCTG CAACTGATGAGCTTTTGTCACGAGTTCTTGACCGTGGATTTATTGACGGTGAGATGAAAGTTTACAGACCAGATGTTGCTAGGGTTGGTGTTGATTCACA ATCACGTGCTGCCCAGGCGGTCTCAGTTGAACGGCGAACTGAACAGCTTTTAGTCAAGAGCCGTGAAGAAGTTTCCAAATGGATGCAAGATTTAAGAGGT CAGGTTGCTTATTTCTCGGCACATATTGCTGATCTCCAGAATAAACTTAGTTTTGCAGCTGTTGATGGTCACTCGCAAGGATCTGTTGGAGTTGACCCTG ATGTTCTCATGGCGCGTGACCAAAACCGAGATGCCTTGCTGCAAAACCTTGCTGCCGCTGTTGAGAACAGAGACAAAGTTCTAGTTGAGATTTCTCGCCT TCTTATATTGGAGTCCAGGTTCCGCAACAATGGCAACTTTAATCTTGAAGAAGCCCGAGCCAGCCTTGAGGCAAGTTTTGCTAATGAAGCAGAGATTGTT TTCACAACTGTGTCAAGTAGTGGTCGCAAGCTGTTCTCTCGTCTGACCCATGGTTTTGATATGGTCGTGATTGATGAGGCAGCCCAAGCTAGTGAGGTCG GCGTTCTTCCTCCGCTTGCACTCGGTGCTGCTCGCTGTGTTCTTGTAGGCGATCCCCAGCAACTACCGGCCACAGTAATTAGCAAAGCTGCTGGGACATT ATTATACAGTAGAAGTCTATTTGAAAGGTTTCAGCAAGCAGGATGCCCAACCATGTTGCTGTCTGTGCAATATCGGATGCATCCTCAAATTCGTGATTTT CCTTCAAGGTATTTTTATCAAGGACGTCTAACGGACAGCGAAAGCGTCACTAAACTCCCCGACGAGGTATATTACAAGGACCCTTTACTGAAGCCTTATC TATTTTATGACGTTACTCATGGGCGAGAGTCTCATCGAGGCGGGTCGGTTTCTTATCAAAACATACATGAAGCACAATTGTGTGTACAGTTGTATGAACA TCTCCTTAAAACTGTAAAGTCCTTGGGTATCGGACGAATCACAGTTGGCATCATCACTCCGTATAAGTTGCAGCTGAAATGCCTTCAGCAGGAATTCTCA GAGATTCTGAAATCTGAAGAGGGGAAAGATATTTATATAAACACTGTGGATGCTTTCCAAGGACAGGAGCGTGATGTCATAATCATGTCGTGTGTGCGTG CCTCTAATCATGGTGTTGGCTTTGTTGCTGATATCCGACGGATGAACGTTGCCCTTACTCGTGCGAGAAGGGCTTTATGGATCATGGGGAATGCTGGTTC TCTGATGAAATCCGAGGACTGGGCTGCATTAATTACTGATGCAAAAGGAAGAAGCTGTTTTATGGACATGGATTCTCTGCCGAAAGATTTCCTTGTTTCC AAGGGAATGCCAGGAGGAGGTAAAGGTCCAGGAGCATCAAACGTAAGAAGTTTGAGATCTGGTGGACTGCGGTACAGCAGGTGGGGTTGA
AA sequence Show only first row Show all	>Lus10033462 pacid=23143392 polypeptide=Lus10033462 locus=Lus10033462.g ID=Lus10033462.BGIv1.0 annot-version=v1.0 MGSRGIIFDLNEPAAEDDETGNVSSQPQISPLSSTSQTPASVNSSTAAQATKDNLAFSHQSSMSGFQPFVRPKVANDEAVLAQNTALDRISKFEPPLNLN NGYGRKTQPQLASGSTASQPAEREEGEWVDTDGSAGSIQHLDSNGNRDSSSCPEAKVVASRQREVKGSEASHALRLANLPVKRKIDHHKEAMLGKMRNRQ TMLINIDEVKQAETVKTLTPKRQLTSARTKENKTLPLAAGERYNHSILKDQKQVELPSSDVGTSLEFSQAKSESNGEINSSQVDKHRRLNGDADSSSDTQ LPPVTRQSSWKQPIDMRHQKNFQMSNRRAPSNNQNPLDKKLGGKKSVHLKKTALTGSSYHDTSVERLIREVTNEKFWHHPEDSELQCVPGQFESSGDYVS VFEPLLFEECRAQLYSTWEELSETNSHIMVRVKNVERRERGWYDVIVLSVNDCKWNFKEGDVAVLSNPKPGTVRSKRNLGSSSEDGDEPDKLDRVAGTVR RHIPLDNRDPPGATLHFYVGDSYDPYGKVDDDHILRKLQHRSTWYLTVLGSLATTQREYVALHAFCRLNSQMQHAILKPSREQFPNYEQQTPTMPDCFTP NFTDHLHRSFNGPQLSAIQWAAMHTAAGTNSGVTKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPHSYKAASENNSESIVVGS IDEVLHNMDQNLFRSLSKLCPKPRMLVCAPSNAATDELLSRVLDRGFIDGEMKVYRPDVARVGVDSQSRAAQAVSVERRTEQLLVKSREEVSKWMQDLRG QVAYFSAHIADLQNKLSFAAVDGHSQGSVGVDPDVLMARDQNRDALLQNLAAAVENRDKVLVEISRLLILESRFRNNGNFNLEEARASLEASFANEAEIV FTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDF PSRYFYQGRLTDSESVTKLPDEVYYKDPLLKPYLFYDVTHGRESHRGGSVSYQNIHEAQLCVQLYEHLLKTVKSLGIGRITVGIITPYKLQLKCLQQEFS EILKSEEGKDIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWIMGNAGSLMKSEDWAALITDAKGRSCFMDMDSLPKDFLVS KGMPGGGKGPGASNVRSLRSGGLRYSRWG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30100			P-loop containing nucleoside t...		Lus10033462 [exp]	0	1
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	4.1	0.9185
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	5.1	0.9462
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	5.5	0.9292
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	7.2	0.9221
AT2G46560			transducin family protein / WD...		Lus10030236 [exp]	7.5	0.9299
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	9.2	0.9126
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	9.5	0.9408
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	9.8	0.9328
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	11.5	0.8957
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10015908 [exp]	11.8	0.9211

Compare expression of checked genes

Lus10033462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.