Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08690 373 / 3e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 357 / 7e-124 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75170 276 / 7e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 259 / 1e-85 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G63060 86 / 2e-19 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 86 / 9e-19 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G01630 84 / 1e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 82 / 2e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 69 / 2e-13 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G39170 64 / 6e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020911 [exp] 619 / 0 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10010804 [exp] 272 / 1e-90 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 267 / 5e-89 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 267 / 9e-89 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10014312 [exp] 264 / 2e-87 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 264 / 3e-86 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10023956 [exp] 120 / 1e-32 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10004684 [exp] 95 / 2e-22 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 92 / 2e-21 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093400 [exp] 420 / 1e-147 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G068700 [exp] 336 / 7e-115 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 274 / 2e-91 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 262 / 2e-86 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 261 / 4e-86 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 259 / 1e-85 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G168100 [exp] 139 / 2e-39 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.017G063966 [exp] 96 / 1e-22 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 91 / 3e-21 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.010G088300 [exp] 91 / 2e-20 AT1G05370 520 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10033464 pacid=23143255 polypeptide=Lus10033464 locus=Lus10033464.g ID=Lus10033464.BGIv1.0 annot-version=v1.0 ATGAGTCTCCCTGCACAACAGTCCTCGTCAAATGGCTTCGACAAGCATTTGTCATCTGCAGAGCAACAGGAGAAGATAAATGAGGTTAGGAGGTTGGTGG GGATGTTGCCGGAGACGTTGTCCATTTACTGTTCCAATGCAACAATCTGCAGATATCTAACGGCAAGAAACTGGAATGTAAAGAAGGCAACTAAAATGCT GAAAGATACTATCAAATGGAGAACAGATTACAAGCCAGAAAATATTCGTTGGGAAGAGATTGCTCTGGAGGCAGATACAGGGAAAATCTACAGATCAAAC TGTATTGATAAGCAAGGAAGACCCGTGTTGGTCATGAGACCTAGTCGCCAGAACACAAAGTCGATCAAAGGACAAATTAGGTACTTGGTGTATTGCATGG AGAATGCGGTCATGAATTTGCCACCAGAACAGGAGAAGATGGTTTGGCTCATTGATTTCGACGGATTCAATCTGTCACATATCTCACTCAAGGTCACCAA GGAAACAGCCAACGTTTTACAGAACCATTATCCAGAGCGCTTGGGTCTAGCTATTCTATACAACCCTCCTAAGTTCTTTGAACCTTTCTGGATGGCAGCA AAGGTGTTCCTAGAGCCAAAGACCCATAACAAAGTAAAATTTGTTTACTCTGACGTACGTGAAACCATGAAGATAATGGAACAACATTTCGATATGGACC GTCTTGAGTCGGCATTTGGTGGGAAGGATATGGCAGGTTTCGACATTGGCGAATATGCAAAGAGAATGAAGGAAGATGACAAGAAGATACCTTTGTTCTG GGCCAAGGAGGGTTGTCGTCCTTCATCATCGTCGGTGTCAGAACCGGCTGTGAAATCAGCTGCTTCGGACCGTGATAGCACACCCGGTTCGGAGACTGTC TCGGTGGATCTCAACCACAATGGTAGTACTGAAAAGAAAGAGAGTGAAGCTGTTGATGACAAAGGGAATAATGGCTGA
AA sequence Show only first row Show all	>Lus10033464 pacid=23143255 polypeptide=Lus10033464 locus=Lus10033464.g ID=Lus10033464.BGIv1.0 annot-version=v1.0 MSLPAQQSSSNGFDKHLSSAEQQEKINEVRRLVGMLPETLSIYCSNATICRYLTARNWNVKKATKMLKDTIKWRTDYKPENIRWEEIALEADTGKIYRSN CIDKQGRPVLVMRPSRQNTKSIKGQIRYLVYCMENAVMNLPPEQEKMVWLIDFDGFNLSHISLKVTKETANVLQNHYPERLGLAILYNPPKFFEPFWMAA KVFLEPKTHNKVKFVYSDVRETMKIMEQHFDMDRLESAFGGKDMAGFDIGEYAKRMKEDDKKIPLFWAKEGCRPSSSSVSEPAVKSAASDRDSTPGSETV SVDLNHNGSTEKKESEAVDDKGNNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10033464 [exp]	0	1
AT5G37480			unknown protein		Lus10013637 [exp]	2.6	0.9159
AT1G20770			unknown protein		Lus10013217 [exp]	4.2	0.9073
AT3G52860			unknown protein		Lus10003357 [exp]	5.2	0.8804
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	6.1	0.8740
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	6.3	0.9013
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	8.5	0.9071
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	9.9	0.9103
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10030343 [exp]	10.4	0.8979
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10000451 [exp]	17.0	0.8912
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	17.9	0.8827

Compare expression of checked genes

Lus10033464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.