Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22170 478 / 5e-171 Phosphoglycerate mutase family protein (.1) AT1G78050 464 / 2e-165 PGM phosphoglycerate/bisphosphoglycerate mutase (.1) AT3G50520 57 / 3e-09 Phosphoglycerate mutase family protein (.1) AT5G04120 57 / 3e-09 Phosphoglycerate mutase family protein (.1) AT5G22620 44 / 0.0002 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020910 [exp] 712 / 0 AT1G22170 476 / 3e-170 Phosphoglycerate mutase family protein (.1) Lus10014360 [exp] 55 / 3e-08 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10026068 [exp] 54 / 4e-08 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093300 [exp] 546 / 0 AT1G22170 495 / 2e-177 Phosphoglycerate mutase family protein (.1) Potri.005G168000 [exp] 533 / 0 AT1G22170 489 / 3e-175 Phosphoglycerate mutase family protein (.1) Potri.005G078100 [exp] 467 / 3e-166 AT1G22170 451 / 7e-160 Phosphoglycerate mutase family protein (.1) Potri.007G040700 [exp] 61 / 2e-10 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1) Potri.011G052200 [exp] 46 / 2e-05 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.004G187700 [exp] 46 / 3e-05 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10033465 pacid=23143430 polypeptide=Lus10033465 locus=Lus10033465.g ID=Lus10033465.BGIv1.0 annot-version=v1.0 ATGACGTCCTCTGCGTTTCACCAACCCACTGGGAGACTCCATTGCCCAAACCAGCGACAAGTTTGCAGTTCCAGGCTCTATCACGGATGTGGAAATGCGT CGATGAAACTTCCTTTCAAGGTTTCTACACTTCAAATTGGTTGGTCAACTGCTGGTGGTGATGGGAACTCCGGATTTGTTACAGCTTCAGCTTCTAACAG ATCGGTGGTTGATCCTGTTTCTTCCCACTCTTCTAATGGCACAAATGGTCAGCGCAAGAAATCAAGTGAAGCAGCTTTGATACTGATCAGGCATGGTGAG TCATTATGGAATGAAAAGAACTTGTTCACTGGGTGTGTCGATGTACCCTTGACGAAAAAGGGTGTCGAAGAGGCAATTGAAGCCGGGAAACGAATCAGCA ATATACCTGTTGACATGATCTATACATCTGCCTTGATTCGTGCCCAGATGACTGCCATGCTTGCAATGACACAGCATCGTCGAAAGAAGGTTCCAATAAT CATGCACAACGAGAATGAGCAAGCCAGATCATGGAGTCAGGTTTTTAGTGAAGAAACAATGAAGCAATCCATCCCAGTTGTAACAGCTTGGCAACTTAAT GAAAGAATGTATGGTGAATTACAGGGTCTCAACAAGCAGGAAACAGCTGACAGGTACGGTAATGAAAAGGTTCACGAGTGGAGACGAAGCTATGACATTC CTCCACCCAATGGTGAAAGTCTGGAAATGTGTGCTGAAAGAGCTGTTGCGTACTTCAGAGATTATATCGAACCCCAACTTCAATCCGGGAAGAACGTGAT GATTGCTGCCCATGGGAATTCATTGAGATCTATTATCATGTATCTTGACAAATTAACTTCTCAGGAGGTTGTCAGTCTCGAGCTATCAACAGGAATACCG ATGCTGTACTTGTTCAAAGAAGGAAGGTTCGTTAGGAGGGGAAGCCCTGTGGCACCTTCAGAAGCTGGGGTTTATGCCTATACTAGGACTTTAGCTCAGT ACAGACAGAAATTAGATGAGATGGTGCACTAA
AA sequence Show only first row Show all	>Lus10033465 pacid=23143430 polypeptide=Lus10033465 locus=Lus10033465.g ID=Lus10033465.BGIv1.0 annot-version=v1.0 MTSSAFHQPTGRLHCPNQRQVCSSRLYHGCGNASMKLPFKVSTLQIGWSTAGGDGNSGFVTASASNRSVVDPVSSHSSNGTNGQRKKSSEAALILIRHGE SLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRKKVPIIMHNENEQARSWSQVFSEETMKQSIPVVTAWQLN ERMYGELQGLNKQETADRYGNEKVHEWRRSYDIPPPNGESLEMCAERAVAYFRDYIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVVSLELSTGIP MLYLFKEGRFVRRGSPVAPSEAGVYAYTRTLAQYRQKLDEMVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	0	1
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	2.0	0.8781
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	3.0	0.8551
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	3.7	0.8681
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	4.5	0.8491
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014460 [exp]	6.3	0.8504
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	7.7	0.8437
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	7.9	0.8426
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	8.5	0.8380
AT2G15860			unknown protein		Lus10021000 [exp]	12.0	0.8026
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	13.1	0.8163

Compare expression of checked genes

Lus10033465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.