Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 531 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 528 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 527 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 476 / 1e-162 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53840 377 / 8e-124 ATPME1 pectin methylesterase 1 (.1) AT2G26450 374 / 3e-122 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 364 / 1e-118 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 358 / 1e-116 ATPME2 pectin methylesterase 2 (.1) AT5G04960 356 / 6e-116 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 355 / 2e-115 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020909 [exp] 1089 / 0 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 750 / 0 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037489 [exp] 676 / 0 AT5G27870 480 / 3e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 413 / 2e-137 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 411 / 3e-137 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 410 / 4e-137 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 385 / 5e-127 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 370 / 9e-124 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 364 / 4e-119 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010464 [exp] 583 / 0 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 528 / 0 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 525 / 0 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 443 / 2e-149 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 427 / 2e-143 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 410 / 5e-137 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 405 / 5e-135 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 405 / 5e-135 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 395 / 2e-131 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 373 / 2e-122 AT3G10710 609 / 0.0 root hair specific 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10033466 pacid=23143294 polypeptide=Lus10033466 locus=Lus10033466.g ID=Lus10033466.BGIv1.0 annot-version=v1.0 ATGGGTGACGACAACGACAAAAAGAAGAAGATCGCCGTGATGGGCGTCTCCTCCATCCTTCTGGTGGCCATGGTGGTCGCGGTCGCCGTCGGTGTAAACA ACGGCCCCGACAAAAGCGGCGAAGGCGGCGGGGACGGTCACGGAGGCATTTCCACAACGTCCAAATCCGTAAAGGTCCTTTGTGCACCATCCCTCTACAA AGAAACCTGCGAGAGCAGTCTCGCCAAGTCGGGCAATAACGTGACCGACCCTAAGAAGATGGTCCAGGTCGGGTTCGAGCTCGCGGTCGAGTCCTTGAAT GACGCGATGAAGAACTCGACCACCATCAAGGAGGTGGCCGAGGACCCCAGGGCGAAACGCGCTGTGGAGATTTGCGAGGATCTCATCGAGACCTCCATCG ATGATTTGAGGCGGTCTCTCGACGAGCTCGACAATTTCGACATGTCAAAGGCGTACATCCACATCGATAATTTAAAGACATGGCTCGAGGCCACCATCAC GTATCAGGAAACGTGCCGCGACGAGTTCGAGAACACGACCGGACCATCCGGCGACAAGATGAGGGAAATTCTGAAGCTCTCCGGGGAGCTGACGAGCAAC GGCCTAGCCATGGTGAGCGGCCTGTCCCAGATACTGAAGACGTTGCACGTACCCGGGGCAGAGTCGAGAGACGACGACGAAAACTTCGGCGACAGCCACA GGAGGTTGTTGGGAGTAGAAGGCGACGTCGGGGCCGGGGGGTTCCCGAGGTGGGTGACGCCGATGCAGAGGAAGTTGCTGGCGGCGACGCCAGAGAATGT GAAGCCGGACATTGTGGTGGCTAAGGACGGGAGCGGGCAGTTTAAGAGTATTATGGAGGCGATTAACACTATTCAGAAGAAGCATAAGGTTCCCATTGTT ATGCATGTTAAGGCCGGGGTTTATAATGAACAGGTGCTCATTCCTAAGTATGTTACCGGACTTATGATGATCGGCGATGGGCCGACTAAGACTAAGGTCA CCGGCAGGAAGAACTTCCACGAGGGTACCCGTACTTCCGATACCGCCACTTTTGCAATATTAGCACCAGGGTTCATAGCAAAGGACATGGGGTTCGAGAA CACAGCAGGAGCAGAAGGCCACCAAGCCGTAGCATACAGGTCCCAGTCCGACAACTCGGTCATCTACAACTGCCAATTCGACGGCTACCAAGACACTCTC TACCCACAATCCAACCGTCAATTCTACCGCGATTGCGTCATCTCGGGAACCATCGATTTCATCTTCGGTGTGGCTCGAACCGTCCTCCAGAACTGCACCA TGATCATCCGCAAGCCGATGGCCAACCAGGCGTGCATCGTGACGGCAGAGGGCCGTAAGGATCCTAACGGATTGTCGGCCATCGTCATCCAGAACAGTCG CATCAAGGGCGACCCGGCTTATGTTCCGGTTAAGGACCAAAACAAAGGCTACCTGGCACGGCCCTGGAAGATTTATTCCAGGACCGTCATCATGCACTCC GCCATCGATGGAGTTATCCAGCCGGAAGGCTTCCTGGCGTGGGATAAAGATTTGGGGCTCAAAACGCTTTACTATGCCGAGTTTGAGAACACGGGTCCCG GTTCGGATACGTCCGGCCGGGTCAAGTGGCCCGGGATAAAGAATATCGGAGCTGCGGAGGCGGAGAAGTTCACGCCGTCCAAATTGTTTGTGGAAGGAGA TGCTTGGATTACGGACAGTGGAGTTCCTTATATTCGTGGTATGAAGTAA
AA sequence Show only first row Show all	>Lus10033466 pacid=23143294 polypeptide=Lus10033466 locus=Lus10033466.g ID=Lus10033466.BGIv1.0 annot-version=v1.0 MGDDNDKKKKIAVMGVSSILLVAMVVAVAVGVNNGPDKSGEGGGDGHGGISTTSKSVKVLCAPSLYKETCESSLAKSGNNVTDPKKMVQVGFELAVESLN DAMKNSTTIKEVAEDPRAKRAVEICEDLIETSIDDLRRSLDELDNFDMSKAYIHIDNLKTWLEATITYQETCRDEFENTTGPSGDKMREILKLSGELTSN GLAMVSGLSQILKTLHVPGAESRDDDENFGDSHRRLLGVEGDVGAGGFPRWVTPMQRKLLAATPENVKPDIVVAKDGSGQFKSIMEAINTIQKKHKVPIV MHVKAGVYNEQVLIPKYVTGLMMIGDGPTKTKVTGRKNFHEGTRTSDTATFAILAPGFIAKDMGFENTAGAEGHQAVAYRSQSDNSVIYNCQFDGYQDTL YPQSNRQFYRDCVISGTIDFIFGVARTVLQNCTMIIRKPMANQACIVTAEGRKDPNGLSAIVIQNSRIKGDPAYVPVKDQNKGYLARPWKIYSRTVIMHS AIDGVIQPEGFLAWDKDLGLKTLYYAEFENTGPGSDTSGRVKWPGIKNIGAAEAEKFTPSKLFVEGDAWITDSGVPYIRGMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05610			Plant invertase/pectin methyle...		Lus10033466 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	1.4	0.9659
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040324 [exp]	2.0	0.9573
					Lus10006761 [exp]	2.4	0.9574
AT5G37360			unknown protein		Lus10003097 [exp]	9.5	0.8702
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10003313 [exp]	10.9	0.8064
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	12.6	0.9585
					Lus10022518 [exp]	20.7	0.9297
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10035058 [exp]	22.7	0.9297
					Lus10037837 [exp]	23.7	0.9207
					Lus10037149 [exp]	24.5	0.9297

Compare expression of checked genes

Lus10033466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.