Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06810 1258 / 0 IBR3 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) AT3G45300 89 / 2e-18 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020908 [exp] 1664 / 0 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10036122 [exp] 94 / 5e-20 AT3G45300 686 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010448 [exp] 1343 / 0 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.008G219000 [exp] 1330 / 0 AT3G06810 1236 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.009G011700 [exp] 96 / 8e-21 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01636 [flax] [poplar] APH Phosphotransferase enzyme family CL0544 [flax] [poplar] AcylCoA_ox_dh_N PF02771 [flax] [poplar] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain CL0544 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033467 pacid=23143525 polypeptide=Lus10033467 locus=Lus10033467.g ID=Lus10033467.BGIv1.0 annot-version=v1.0 ATGTCTAGCCGGACATCTGATCTCGTCGGTGAAGTCCAGGCGGCTCACCAGTTCGATCGGAACGCCTTGTTCCGTTACGTTTCTGCTAACGTCGCCGGTT TCCCCGACTCTCAGCCTTCCACCTTCTCCGTTAAGCAGTTTGGACATGGCCAATCCAATCCCACGTTTTTGTTGGAAGCTGGCGCCGGAACCTCCTTGAA ACGCTACGTTCTTAGGAAGAAGCCTTCTGGGCAGTTGCTGCAGTCTGCTCATGCTGTCGATAGAGAGTACCAAGTTCTTCGAGCTCTGGGAGAGCATACT CAAGTTCCGGTCCCCAAGGTGTTCTGTTTGTGTATGGACTCAAGGGTGATTGGAACTGCATTCTATATAATGGAGTATTTGGAAGGCCGCATTTTCATTG ACCCCAGGCTTCCGGGAGTTGCACCGAAGAGCAGGAGGGCAATCTACCGAGAAACTGCAAGGACATTGGCTGCTCTGCATTCTGTAGATGTGGATGCTAT CGGTCTGAAAAAGTATGGGCGTCTGGATAACTACTGTAAAAGACAGGTGGAAAGATGGGCTAAACAATACATTGCATCAACTGCTGAGGGGATGTCTCCG AGATATGACAGGATGTTAGAGCTGTCTGATTGGTTGCGTCAACACATTCCTACTGAGGACGCTTTAGGGACAGCAGGAGGCCTGGTTCATGGAGACTTCC GCATTGACAACCTTGTATTTCATCCCTTTGAGGATCGAGTGATTGGTATTCTGGACTGGGAATTGTCTACACTTGGGAACCAGATGAGCGATGTTGCTTA CTCTTGTTTGGCTCATCATGTAGACATTGACCTTTCCAACCAACAACTTGGTGAAGGAATGGAATCTGCCCTTCCTGAAGGGATTCCTTCACAAACAGAA TATATTGCCGAGTATTTTTCTGCATCTGGAAAACCATGGCCTGCCAACACATGGAAGTTTTATGTTTCCTTTGCTATGTTCCGTGGAGCTTCTATCTATG CTGGCGTGCATAGTCGATGGATAATGGGTAATGCTTCTGGGGGCGAGCGTGCTCGTCATGCTGGAAGGCTGGCCAATGGTCTTATAGATTATGCTTTGGA ATTTATATCAAAGCCAACAGTACTCCCTGATCACTCTCCATATGATGAAGCTGCTCATGAAATGAAAACTCAAGCACTTATGACGGAAAGTGGGATGTTA GTTCCTTCGAGAAAAGTGCTGGAACTGAGGATGAAACTAATGAAGTTTATGGAAGATCACATTTACCCCATGGAAACTGAATTTGCTAAACTTGCTCGGT CTTCCTCACGCTGGACAATCCATCCGGAAGAGGAGAGGTTAAAGGATCTGGCAAAGAAACAAGGATTATGGAACTTATTTATTCCGTTGGACAGTGCTGA AAGAGCCAGGAAGCTATTATTTGACGGGAGCAATGATGTCCCCTCAAGCGATGCGCATGATCAATTACTTGGTGCTGGCCTCTCAAATCATGAATATGGC TACCTTTGTGAGATCATGGGTCGTTCTGTATGGGCGCCGCAGGTTTTCAATTGTGGTGCCCCTGACACCGGAAATATGGAGGTATTATTGCGCTATGGAA ATAAGGACCAGCTCCTTAAATGGCTTATCCCGTTGCTTCAAGGAAAGATTCGTTCGGGATTTGCAATGACGGAGCCACAAGTTGCGTCTTCTGATGCAAC CAATATCGAGTGCTCCATTAGAAGAGAAGGTGACTCGTACATTATCAACGGGACTAAATGGTGGACAAGCGGAGCCATGGATCCAAGGTGTAAAGTTCTC ATCGTCATGGGGAAAACAGACTTCGGAGCTGCCATTCATAAACAGCAGTCCATGATATTAGTAGACATGCATGCTCCAGGCGTGAAAGTAAAGAGACCAC TTGATGTCTTTGGCTTTGATGATGCACCTCATGGGCACGCCGAAATCACATTCGAAAGTGTACGAGTGCCCGCAGCGAATATTATTTTGGGAGAAGGGCG TGGGTTTGAGATTGCACAGGGTAGACTAGGCCCAGGAAGGCTGCATCACTGCATGAGATTGATAGGTGCTGCAGAGCGCGGAATGCAGTTGATGGCTGAA AGAGCTCTCAGTAGAAAAACTTTTGGGAAGTTCATTGCTCAGCATGGTTCATTCCAAACAGATCTTGCTCACTGTCGGATAGAGCTGGACAAGACGAGGC TGTTGGTTTTGGAGGCAGCGGAGCAGCTTGATCGGCTAGGGAACAAAAAGGCTAGAGGGACAATCGCAATGGCCAAGGTAGCAGCACCAAGTATGGCTCT GATGGTGTTGGACAGAGCAATGCAAGTGCACGGAGGGATGGGGTTATCGTCGGACACGGTTCTTTCGCATCTTTGGGCCACCGCTCGGACATTGAGGATA GCCGATGGTCCGGATGAAGTCCACTTGGGTACCATTGCCAAGTTAGAACTACGAAGAGCTAAGCTTTGA
AA sequence Show only first row Show all	>Lus10033467 pacid=23143525 polypeptide=Lus10033467 locus=Lus10033467.g ID=Lus10033467.BGIv1.0 annot-version=v1.0 MSSRTSDLVGEVQAAHQFDRNALFRYVSANVAGFPDSQPSTFSVKQFGHGQSNPTFLLEAGAGTSLKRYVLRKKPSGQLLQSAHAVDREYQVLRALGEHT QVPVPKVFCLCMDSRVIGTAFYIMEYLEGRIFIDPRLPGVAPKSRRAIYRETARTLAALHSVDVDAIGLKKYGRLDNYCKRQVERWAKQYIASTAEGMSP RYDRMLELSDWLRQHIPTEDALGTAGGLVHGDFRIDNLVFHPFEDRVIGILDWELSTLGNQMSDVAYSCLAHHVDIDLSNQQLGEGMESALPEGIPSQTE YIAEYFSASGKPWPANTWKFYVSFAMFRGASIYAGVHSRWIMGNASGGERARHAGRLANGLIDYALEFISKPTVLPDHSPYDEAAHEMKTQALMTESGML VPSRKVLELRMKLMKFMEDHIYPMETEFAKLARSSSRWTIHPEEERLKDLAKKQGLWNLFIPLDSAERARKLLFDGSNDVPSSDAHDQLLGAGLSNHEYG YLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKDQLLKWLIPLLQGKIRSGFAMTEPQVASSDATNIECSIRREGDSYIINGTKWWTSGAMDPRCKVL IVMGKTDFGAAIHKQQSMILVDMHAPGVKVKRPLDVFGFDDAPHGHAEITFESVRVPAANIILGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMAE RALSRKTFGKFIAQHGSFQTDLAHCRIELDKTRLLVLEAAEQLDRLGNKKARGTIAMAKVAAPSMALMVLDRAMQVHGGMGLSSDTVLSHLWATARTLRI ADGPDEVHLGTIAKLELRRAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10033467 [exp]	0	1
AT2G19710			Regulator of Vps4 activity in ...		Lus10000978 [exp]	3.9	0.8390
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	14.2	0.8315
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	15.9	0.7851
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	16.5	0.8276
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	17.5	0.7993
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	18.9	0.8340
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	21.5	0.8149
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	25.0	0.7944
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	30.0	0.8015
AT4G28600		NPGR2	no pollen germination related ...		Lus10003618 [exp]	33.0	0.8204

Compare expression of checked genes

Lus10033467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.