Plant FIBer expression Database

Lus10033468 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11240 571 / 0 transducin family protein / WD-40 repeat family protein (.1)
AT1G15420 44 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020907
[exp]
1017 / 0 AT5G11240 650 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G005400
[exp]
704 / 0 AT5G11240 651 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Potri.003G060900
[exp]
56 / 5e-08 AT1G15420 163 / 5e-48 unknown protein
Potri.001G173300
[exp]
56 / 5e-08 AT1G15420 164 / 2e-48 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04003 Utp12 Dip2/Utp12 Family
CL0186 Beta_propeller PF00400 WD40 WD domain, G-beta repeat
Representative CDS sequence
>Lus10033468 pacid=23143501 polypeptide=Lus10033468 locus=Lus10033468.g ID=Lus10033468.BGIv1.0 annot-version=v1.0
ATGGCGTCTAGCAATATCAGGGGCCTGCTGACTGCATTCAGTCCGTCATTGGACTACTTCGCTATTAGCTCAGGCGATGGTCGAGTAAAGATTTGGGACA
CTTTGAAGAGCCAGCTTCAGACGGAGTTTGCGGACATATCGTCCAGTGATGTCAGTCTGTTGGCTAAAACGAAGAGAGGACACCTTTCGGTTGATTACAC
ATGCATCGAATGGCTATCTCTTGACAGAAAGAAGAAACGGAAACTAGGGAGTTCGTTGTTAGTATTAGGAACTGGTAGTGGAGATGTCCTGGCGCTTGAT
GTCGCTGCTGGTCAACCCAAGTGGATCGTAAGCGATTGCCATCCTGGGGGTGTGACTTCGATTTCATTTTCTGCCAGCGAATCAAGCATCTACACTGCAG
GTGCTGATGGAATGATTGGCCAAATTGACGGGAAAACTGCAAATGGGACCAGAAAGTTTAAAGCATCAACAAAAGCAATATCTTCCATGTGTGTTTCTCC
AGATGGGAAGACATTGGCAACTGCTGCTTCACAAGTAAAAACATTCAGTTGCTCTGATCACCAAAAGCTACAGAAATTTTCTGGTCATCCAGGAGCTGTT
CGATGTATGATCTTTACTGATGATGGTAAATACATTCTCTCCTCTGCGACTAATGAAAGATATGTCGCCCTATGGAAAACTGGCAGCGGAAAGAAGCAGC
CAACAAGCTGTGTTTTGGCAATGGAACATCCTGCAGTTTTCCTTCATGCCAAGTGTGTTGAGAACGGCGGAGGAGATGAGCCAGGGCTTTATGTTTTGGC
CATCTCGGAGACCGGTGTTTGTTATACATGGTGCGGACAGAGTGTTGAGGAACTACGGAGTGCCAAGCCCACAATGGTCTCATTATCTCACGATGACACC
TCCCTGAAAAGTCAGAGGGGTCCACTCCCTGCAATATTTGCAGCTCAATTACAAGTCATAGCAAAACCTACATCTGCAAATGTCTATCTTGCCTATGGTT
TGCTGGTGAAGCCTTCATTTCAGAAAATATTTGTGGAAGCTGGCAAAGATGTGGAGTTAAATAGTTCACAGGATGGAGTTCTCCTTCCACAATGGCTTAA
TAATGAATATGATTTTCTTTTGTATTTATCAACAGTTACTGCACTCGACCGTGCAAATGTGGAGGATGCACTTCTTCCAGTACCAAAAATATCTGATTTT
CATGATAAAAAGAAGAGAGACAGACAGAGCAATGTATCTGATGACATCATGGTTGATTTGGTTGATAACAGGAGCAAACCCGAGTCCAGAGATCCTAAAG
ATGACATGGTAGGCGTTGAAACTCCAACAACGAGCATGGAGATACGACTCAGAGAATTGAGAATACTACCTGGTGATTCTGACTTTGTCAAACGAGCATT
GGATTCTCTAACTAATGTGGGAATCCAACTTCAAGATAATGTTCCCCAAAAGAAGATCAGGACTTCTGTTTTGTCCATGGAACCTAGCAATGCGCACAAG
TTACTTGTGACCTTGCTGTCCGTATGGCAGTCCAGGTCTCATAATGCCAAATCGGTGCTACCGTGGATATCCTGGATATTGGTCATTCACGGGCGTCACA
TCTTGGCTCAAGAAAAACCCGATACCCAAATGCTTAATTCATTGCTGAAGATCACGCGATCCAGAGGGAATGCTGTTGAGCCCTTACTGCAATTGTCAGG
TCGATTGCAGCTTGTGACCGCACAGTTTGACAAGGGCTCCTTGGACAAGAACCAAACTGATGTGCAAGTAGAGGATGAAGACGATGACGACGATGAGGAA
GTGGATGAAGATGTATATAGGGAGGACGACGATCAGTCAGATCTAAGCAGTGACGATGATAAGAATTGA
AA sequence
>Lus10033468 pacid=23143501 polypeptide=Lus10033468 locus=Lus10033468.g ID=Lus10033468.BGIv1.0 annot-version=v1.0
MASSNIRGLLTAFSPSLDYFAISSGDGRVKIWDTLKSQLQTEFADISSSDVSLLAKTKRGHLSVDYTCIEWLSLDRKKKRKLGSSLLVLGTGSGDVLALD
VAAGQPKWIVSDCHPGGVTSISFSASESSIYTAGADGMIGQIDGKTANGTRKFKASTKAISSMCVSPDGKTLATAASQVKTFSCSDHQKLQKFSGHPGAV
RCMIFTDDGKYILSSATNERYVALWKTGSGKKQPTSCVLAMEHPAVFLHAKCVENGGGDEPGLYVLAISETGVCYTWCGQSVEELRSAKPTMVSLSHDDT
SLKSQRGPLPAIFAAQLQVIAKPTSANVYLAYGLLVKPSFQKIFVEAGKDVELNSSQDGVLLPQWLNNEYDFLLYLSTVTALDRANVEDALLPVPKISDF
HDKKKRDRQSNVSDDIMVDLVDNRSKPESRDPKDDMVGVETPTTSMEIRLRELRILPGDSDFVKRALDSLTNVGIQLQDNVPQKKIRTSVLSMEPSNAHK
LLVTLLSVWQSRSHNAKSVLPWISWILVIHGRHILAQEKPDTQMLNSLLKITRSRGNAVEPLLQLSGRLQLVTAQFDKGSLDKNQTDVQVEDEDDDDDEE
VDEDVYREDDDQSDLSSDDDKN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11240 transducin family protein / WD... Lus10033468
[exp]
0 1
AT4G02400 U3 ribonucleoprotein (Utp) fam... Lus10030364
[exp]
1.0 0.9555
AT2G40360 Transducin/WD40 repeat-like su... Lus10011471
[exp]
3.7 0.9404
AT1G06900 Insulinase (Peptidase family M... Lus10042213
[exp]
4.5 0.9022
AT1G06720 P-loop containing nucleoside t... Lus10013507
[exp]
4.5 0.9302
AT1G31660 unknown protein Lus10032891
[exp]
5.7 0.9316
AT5G23880 ATCPSF100, EMB1... ENHANCED SILENCING PHENOTYPE 5... Lus10035061
[exp]
7.0 0.9252
AT1G06560 NOL1/NOP2/sun family protein (... Lus10007337
[exp]
7.1 0.9177
AT4G25120 ATSRS2 ARABIDOPSIS THALIANA SUPPRESSO... Lus10016712
[exp]
7.2 0.8945
AT1G30240 unknown protein Lus10026071
[exp]
7.4 0.9171
AT1G06720 P-loop containing nucleoside t... Lus10007980
[exp]
7.5 0.9245

Lus10033468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.