Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06330 57 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G29100 57 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 56 / 2e-09 Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 56 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 57 / 6e-09 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 57 / 6e-09 Heavy metal transport/detoxification superfamily protein (.1) AT4G35060 53 / 2e-08 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 55 / 5e-08 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G56210 54 / 7e-08 Heavy metal transport/detoxification superfamily protein (.1) AT4G39700 52 / 8e-08 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020906 [exp] 389 / 3e-134 AT5G27690 50 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) Lus10013911 [exp] 62 / 4e-11 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10039419 [exp] 57 / 8e-10 AT4G08570 215 / 5e-73 Heavy metal transport/detoxification superfamily protein (.1) Lus10020704 [exp] 57 / 1e-09 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 56 / 4e-09 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 56 / 4e-09 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 56 / 5e-09 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 55 / 5e-09 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10001892 [exp] 55 / 7e-09 AT1G06330 101 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005300 [exp] 124 / 7e-33 AT4G39700 55 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G065600 [exp] 67 / 3e-13 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 66 / 6e-13 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 65 / 2e-12 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G003700 [exp] 62 / 3e-11 AT4G08570 207 / 5e-70 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G092200 [exp] 61 / 3e-11 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 60 / 1e-10 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G056800 [exp] 57 / 6e-10 AT1G06330 147 / 4e-46 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 57 / 7e-10 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G079800 [exp] 56 / 4e-09 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10033469 pacid=23143464 polypeptide=Lus10033469 locus=Lus10033469.g ID=Lus10033469.BGIv1.0 annot-version=v1.0 ATGGCTTCCCATCCAGAGAATCCTGCTAGAGTTACAGAGATACAAGTCCGGGTGGACTGCAACGGCTGCGTCCAGAAGATCAAGAAGGCACTTCATGGCA TCACTGGGATTTACGATCTCTACGTCGACTTCCCTCAGCAGAAGTTGACAATTGTCGGGTGTGCTGATCCGGAAAGGATCGTTAAAGCAATTAGGAAGAC TAGGAAAACAGCTATTATCATCTGTTCTTCTTCTTCCCACGTTGAACAACAGCAGCCTGCAGACACTCCTCCTCCTCCACAGCCGCCAGATCACGAGGAA AACCACGACGATGTACTGTCTGCTGATGAATCATCTAATCCTCCGGCAGGTGCAGACACTCCACCACCACCACCACCCGAACCATTACCACCGCCACCAC CACCACCATCAGTTGATCCGCAGCCACCAAATGGGCCACCAGCACAGCCGGAACATCAGAATCAACAACCGGAGGAAAATTTACCATCAAACCAGCATTA CCCACCTAGAAGGCAGGGAGATGCAGGGGAGGTCCACGTCATTTACCATCATGATCACCAACCACCACCACCACCACCGGATCACTACGGATACAGATAT GGCGCTAACGGTGGCTCTAGTTCCATTCCCGGATATCATCAATTCGAAAGATACCGCGATGGACCACCGTTGTATCCTCAAGTTCCTCCTTCACAGATGG AACGGCAACCACCGTACATGACGAATCACAGCCCTCAAGTTCCTATACAGATCATGGAACGACAACCAGGCTACGTTGCGAATCACAGCCCTCAAGTTCC TATACAGATGGAACGACAACCAGTCTACGTTGTGAATCACAGCCCTCAAGTTCCGATGGAACGGCAGCAACCAGTGTACATGACGCATCACAGCCCACGA GTTCCTCCTCCACAGATGGAGCGGCAGCCTGTGTACGTGACGACGCATCACAGCTATAACACGTACAGGCCATCCCCGTATGTGACGGAGTACGAATATG TCCGATCAGCGATGCCGGCCCCACCACCACCACCACCACAACAACAGCCGAGATACACGCATAATTACAGCAGGATGGACTACTACAGCGAGGAATACCA TGACGTTAACCCTCCAAGTAATGGGAACATCACCTCGATGTTCAGTGACGAAAACCCCAACTCCTGCACAGTTATGTGA
AA sequence Show only first row Show all	>Lus10033469 pacid=23143464 polypeptide=Lus10033469 locus=Lus10033469.g ID=Lus10033469.BGIv1.0 annot-version=v1.0 MASHPENPARVTEIQVRVDCNGCVQKIKKALHGITGIYDLYVDFPQQKLTIVGCADPERIVKAIRKTRKTAIIICSSSSHVEQQQPADTPPPPQPPDHEE NHDDVLSADESSNPPAGADTPPPPPPEPLPPPPPPPSVDPQPPNGPPAQPEHQNQQPEENLPSNQHYPPRRQGDAGEVHVIYHHDHQPPPPPPDHYGYRY GANGGSSSIPGYHQFERYRDGPPLYPQVPPSQMERQPPYMTNHSPQVPIQIMERQPGYVANHSPQVPIQMERQPVYVVNHSPQVPMERQQPVYMTHHSPR VPPPQMERQPVYVTTHHSYNTYRPSPYVTEYEYVRSAMPAPPPPPPQQQPRYTHNYSRMDYYSEEYHDVNPPSNGNITSMFSDENPNSCTVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	0	1
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	1.0	0.9642
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	1.4	0.9628
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	2.4	0.9541
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	2.8	0.9432
					Lus10041616 [exp]	3.6	0.9222
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	6.6	0.9237
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	7.0	0.9306
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	8.7	0.9358
					Lus10029851 [exp]	8.8	0.8587
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	8.9	0.9172

Compare expression of checked genes

Lus10033469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.