Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28860 869 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G02520 835 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 825 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 825 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT2G36910 820 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 816 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 811 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G27940 808 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT2G47000 806 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT4G01820 805 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020905 [exp] 2566 / 0 AT3G28860 988 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008139 [exp] 1963 / 0 AT3G28860 1002 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10013178 [exp] 1717 / 0 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 841 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 835 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 832 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10010067 [exp] 807 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10017271 [exp] 805 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10038049 [exp] 796 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165000 [exp] 1703 / 0 AT3G28860 857 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.017G081100 [exp] 863 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.006G123900 [exp] 839 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.016G093600 [exp] 837 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.010G003000 [exp] 822 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.002G187500 [exp] 818 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113500 [exp] 813 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.001G354900 [exp] 810 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.003G094400 [exp] 806 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 803 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10033470 pacid=23143293 polypeptide=Lus10033470 locus=Lus10033470.g ID=Lus10033470.BGIv1.0 annot-version=v1.0 ATGGACGACACCTCCTTCGACGGCCGCCGCCGCACTCCGCACCACCGCTCCCCGAACAACCGCCGCCGTCGCCGTGGCAGCGGCCTTCCCCCATCTCCGG CCTCTCGTTCCTACGCACTTTTCAGCTCCATAGACATGTCACTCGTCTCCGGAAACTTAACTCCCCATCGTCGTCGTCGCGACCCTAGCCGGAATCCTCC GTCGGCCGCATTCGCCGCCGATGGTGACGTGTCATGGCAGGGTGAAGTGTCCTGGCAGTACGAGCCCACCGGGTGGATGAATGACAGCCGTACTTTCGGC GCGATTATGAGCCCATGGGCTGCCACGACTCCTTCGGCCTACCGGGCCATGCGGAGATCAGCCCAAGACTTTTACCTTTCCCGAACCCGTGGCGGGTTCA GAAGTTCGGGAACTTCTTACTACGATCGCTCCGGAATTAGCGGCGTTTCCACCGGCAGGCTTAATTTGAAGAGCTACAGAGATGACGGCGACGACAATGG TAATTATAACGCTCATGTCGTTAATGTCAGAGATTACGACGCTGCTCCGGTGACGGTGAAGGCTGAGAAAGCTCCGTCACAGTGGAGCGAGCTGGAAGCT GTCGCTGAACATCAGAGCAGGGGAAGTAATGTTGGACTCAATGGCGGCGGGGGGCGTCAAGATAGGAGTGACTCGAAGCGGAACTCTGTTTCGAATGCTT ACGTTGGCGTAGCAGTTAGTCCGGCGATCGGTCGCGGAAGTTATGGAGATTTTTATAAGAACGGCGGTCGAAGTGGGGAATATGAAGGTGGTGATTATGA GGAGGAATACGATGACGAGGAGGAGGAGGAAGAGGAAGAAGGAAGGAAATCGGTTGGATTGTTTGGACTGTTCAAGTACTCTACGGGATGGGACATGTTC CTTGTGTTCTTGGGATGTTTAGGAGCTCTCATCAATGGCGGGGCTCTTCCTTGGTATTCTTTTCTGTTTGGAAACTTTGTGAACAAAATTGCTAAGGATA CCAAGGATGAGATTATGGACGATGTTCAGAAGATTTGTGTGCAGATGTCTGCACTTTCAATAGTGGTGATGTTTGGAGCATACATAGAAATCACCTGTTG GAGATTGGTGGGAGACCGGTCAGCTCATCGGATAAGAACCAAGTATTTGAGAGCAATCCTGAGACAAAACATTGGCTTTTTTGACACTCAAATCAGCACA GGGGACATAATGCATGGAATTGCAAGCGATGTTGCGCAAATTCAAGAAGTGATGGGAGAAAAGATGGCTCATTTCGTTCAGCAACTATTTACCTTCTTTT GTGGTTACATGGTTGGTTTCCTGAGATCATGGAAGGTATCTCTTGTGGTCTTCTCAGTGACCCCTTTGATGATGTTTTGTGGCATTGCTTATAAAGCTAT CTATGTTGGTCTGGCTGCTAAAGAAGAGGCATCATATATGAAAGCTGGCACTGTTGCTCAACAAGCCATCAGTGCAATGAGGACTGTGCTTTCTTTTGTT GCAGAGGACAATTTAGCTGAAAAATACTCGCAGCTGTTGAATAACTCGGTTCCGATTGGAGCAAAGATTGGATTTGCGAAGGGGGCCGGAATGGGGGTGA TTTACTTGGTCACGAACTCCACATGGGCATTAGCCTTCTGGTATGGGTCGATCTTGGTTGCGAAAGGGGAGATCACCGGAGGGGATGCGATCGCGTGTTT CTTTGGGGTCAACTTAGGAGGAAGAGGGCTGGCACTATCCTTGTCATATTTTGCTCAGTTTGCTCAAGGCACAGTTGCAGCGACGCGTATGTATGAAATC ATTGACAGGGTTCCAGTCATTGATCCTTATAGTCTTGAAGGGAGGACAATGTCAGGAACTCGTGGAAGGATCGAGCTGAAAGGAGTCACTTTTGCTTATC CATCTCGTCCAGAGACACCAATCTTAACATCCATCAACCTAGTTATTCCATCTTCAAAGACACTTGCGCTGGTGGGTGCAAGTGGAGGAGGCAAATCCAC CATTTTTGCTCTTATAGAAAGATTCTATGACCCAAATTCTGGAGTGGTTACCTTGGATGGTCATGACTTGAGGACACTGCAGGTTAAGTGGCTAAGAAGT CAAATGGGAATGGTAGGACAGGAGCCAATCCTCTTTGCAACGAGCATTATGGAGAATGTTCTTATGGGAAAGGAGGATGCCACCGAGAGAGAGGCAATTA AAGCCTGTATTGCGGCCAATGCTCATGAATTCATATCTGCTCTTCCAGAAGGCTATGACACTCAGGCTGGTGACAGAGGAACACAGCTCTCAGGCGGACA GAAACAGAGAATTGCATTGGCTCGTGCCATCCTTAAGGACCCCACTATCCTTCTTTTAGATGAACCCACAAGTGCATTAGATCCCGAATCCGAGTCTGCA GTTCAGAAAACCATTGATAAAATCTCTGTTGGTAGAACAACGGTTGTCATTGCTCATAGATTAGCAACGGTGAAAAATTCCAACACCATTGTTGTTCTTG ATCAAGGTTCTGTGGTTGAAATCGGCAATCATCGCCAGCTAATGGACAAAGCTGGTTCCTACTATGACCTTGTCAAGCTTGCTTCTGACGGGGTCTCAAA ACCAATGTCGAATCAAGCGGAATTCAACAAGGATCGTGGGAAGTCTATGGATGAGAAGTCAGTCAGTGTTATCAAATCAACTACCAAGTTTGAGAAATCT AGGTCAATGCACTCAAAATCAAGGCTATTAGAGAGAGAGGTTCGGGATGAAACACAGAAAACTCGGGAGATGACCAAGTTTCGGCTCTCAGAAGTGTGGG ATCTTCAAAGACCAGAATTCCTGGCACTTGCTTTAGGCTTCCTTGGGGGTATTGTTGCAGGTGCAATTCTATCTGTATTTCCTTTCCTTCTTGGCTTAGC CCTTCAGGTCTATTTTGATGATGACCCTTCAAAGCTAAAAAGAGATGTTGGTAATCTCGTTTTAGTTATTTTGAGTCTTGGGGTTGGCTTGATTGTCACA ATGACTGGCCAGCAAGGCTTTTGTGGGTTGGCAGGTACTAAACTTACAGTAAGAGTGAGAAAGCTCTTGTTCCATTCTATTCTTAGACAGGAACCTGGTT GGTTTGATTTAGAAGAGAACTCTACCGCATCACTTATCTCAAAGTTGTCGGTTGATTGCATCACTTTCAGATCAGCTCTTGGGGACAGATTCTCAGTATT GTTAACCGGTTTAAGTTCAGCTGCTGTTGGTCTTGGTTTGTCATTTTTCCTTCAATGGAAACTCACCCTTGTAGCTGCAGCACTAACTCCTTTCACCCTT GGTGCAAGTTACTTGAATTTGATCATCAACGTTGGGCCGAAGCTGGACAATGACTCTTACACCAGAGCAAGCAACATTGCTTCTAGTGCTGTGTCAAACA TCAGAACAGTAACAACGTTTGCAGCTCAGGAACAGATAGTCCGGTCCTTTGGTCAAGCTCTTGCAGAACCAACGAAGAAATCAGAGAGGAAATCTCAGAT CTTAGGGCTAACACTTGGTTTCTCTCAGGGTGCGATGTATTTCGCGTACACTTTGACCCTCTGGTATGGAGCCTACCTTGTCAAGCAAGGAGAATCGAAC TTTGGTGATGTGTATAAAATCTTCCTCATCCTTGTTTTAAGTTCATTTTCTGTTGGACAACTAGCTGGACTAGCACCAGATACTTCAATGGCCGCAACAT CCATCCCTGCTATCTTCAACATCATTCATCGCAGACCATTGATCATCAGTGCAGGAAAGGCAAAGAAAGTTGATAGATCAAAGCCGTTGGATATTGAACT CAAGATGGTGACGTTTTCATATCCTTCCAGGCCCGAGGTTACAGTGTTGAGAGACTTCTCCTTAAAAATCAAGGGTGGTAGCATGGTAGCATTAGTTGGG GGTAGTGGTTCGGGGAAATCAACTGTTGTATGGTTGGTGCAAAGGTTTTACGACCCTAATCAAGGAAAGGTCAGACTCGGAGGCGTAGACCTGAGGGAGC TCGATCTCAAGTGGCTAAGAATGCAAATAGCTTTAGTTGGTCAGGAGCCTGCACTGTTTTCAGGTACCATAAGAGACAATATTGCTTTTGGAGATCCGAA TGCTTCAAGGGCTGAGATTGAAGAAGCTGCGAAAGATGCTTATATCCATAAGTTCATCAGCAGCCTCCCTCAAGGTTATGACAGTGAGGTAGGTGAAAGT GGCTTCCAATTATCAGGAGGACAGAAGCAAAGACTAGCAATAGCAAGGGCAATGCTAAAGAAATCGAGTGTGCTGCTACTTGATGAAGCCAGCAGTGCAT TGGACTTGGAATCGGAGCAACATGTCCAGGCAGCACTCCGGAAGGCGTCTAAGAGAGCCACCACCGTTGTTGTCGCGCATAGGCTCTCTACGATTAGAGA GGCTGACGTGATTGCCGTGGTGAAAGATGGTTCAGTGATAGAGTCCGGGAGTCATAATACACTCCTGAATTCGAACCTTAATGGTATCTATGCTAGCATG GTTCGCTCCGAGGCCGAAGCTACTGCATTTGCTTGA
AA sequence Show only first row Show all	>Lus10033470 pacid=23143293 polypeptide=Lus10033470 locus=Lus10033470.g ID=Lus10033470.BGIv1.0 annot-version=v1.0 MDDTSFDGRRRTPHHRSPNNRRRRRGSGLPPSPASRSYALFSSIDMSLVSGNLTPHRRRRDPSRNPPSAAFAADGDVSWQGEVSWQYEPTGWMNDSRTFG AIMSPWAATTPSAYRAMRRSAQDFYLSRTRGGFRSSGTSYYDRSGISGVSTGRLNLKSYRDDGDDNGNYNAHVVNVRDYDAAPVTVKAEKAPSQWSELEA VAEHQSRGSNVGLNGGGGRQDRSDSKRNSVSNAYVGVAVSPAIGRGSYGDFYKNGGRSGEYEGGDYEEEYDDEEEEEEEEGRKSVGLFGLFKYSTGWDMF LVFLGCLGALINGGALPWYSFLFGNFVNKIAKDTKDEIMDDVQKICVQMSALSIVVMFGAYIEITCWRLVGDRSAHRIRTKYLRAILRQNIGFFDTQIST GDIMHGIASDVAQIQEVMGEKMAHFVQQLFTFFCGYMVGFLRSWKVSLVVFSVTPLMMFCGIAYKAIYVGLAAKEEASYMKAGTVAQQAISAMRTVLSFV AEDNLAEKYSQLLNNSVPIGAKIGFAKGAGMGVIYLVTNSTWALAFWYGSILVAKGEITGGDAIACFFGVNLGGRGLALSLSYFAQFAQGTVAATRMYEI IDRVPVIDPYSLEGRTMSGTRGRIELKGVTFAYPSRPETPILTSINLVIPSSKTLALVGASGGGKSTIFALIERFYDPNSGVVTLDGHDLRTLQVKWLRS QMGMVGQEPILFATSIMENVLMGKEDATEREAIKACIAANAHEFISALPEGYDTQAGDRGTQLSGGQKQRIALARAILKDPTILLLDEPTSALDPESESA VQKTIDKISVGRTTVVIAHRLATVKNSNTIVVLDQGSVVEIGNHRQLMDKAGSYYDLVKLASDGVSKPMSNQAEFNKDRGKSMDEKSVSVIKSTTKFEKS RSMHSKSRLLEREVRDETQKTREMTKFRLSEVWDLQRPEFLALALGFLGGIVAGAILSVFPFLLGLALQVYFDDDPSKLKRDVGNLVLVILSLGVGLIVT MTGQQGFCGLAGTKLTVRVRKLLFHSILRQEPGWFDLEENSTASLISKLSVDCITFRSALGDRFSVLLTGLSSAAVGLGLSFFLQWKLTLVAAALTPFTL GASYLNLIINVGPKLDNDSYTRASNIASSAVSNIRTVTTFAAQEQIVRSFGQALAEPTKKSERKSQILGLTLGFSQGAMYFAYTLTLWYGAYLVKQGESN FGDVYKIFLILVLSSFSVGQLAGLAPDTSMAATSIPAIFNIIHRRPLIISAGKAKKVDRSKPLDIELKMVTFSYPSRPEVTVLRDFSLKIKGGSMVALVG GSGSGKSTVVWLVQRFYDPNQGKVRLGGVDLRELDLKWLRMQIALVGQEPALFSGTIRDNIAFGDPNASRAEIEEAAKDAYIHKFISSLPQGYDSEVGES GFQLSGGQKQRLAIARAMLKKSSVLLLDEASSALDLESEQHVQAALRKASKRATTVVVAHRLSTIREADVIAVVKDGSVIESGSHNTLLNSNLNGIYASM VRSEAEATAFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10033470 [exp]	0	1
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	6.6	0.9069
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	12.2	0.8793
AT4G10050			esterase/lipase/thioesterase f...		Lus10006170 [exp]	13.2	0.8523
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	21.1	0.8757
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	21.8	0.8605
AT5G23300		PYRD	pyrimidine d (.1)		Lus10024096 [exp]	25.2	0.8774
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	26.3	0.8759
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Lus10025652 [exp]	28.6	0.8653
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	28.6	0.8759
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	31.9	0.8714

Compare expression of checked genes

Lus10033470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.