Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14160 305 / 3e-100 2-oxoglutarate-dependent dioxygenase family protein (.1) AT3G14140 257 / 1e-81 2-oxoglutarate-dependent dioxygenase family protein (.1) AT5G01780 253 / 6e-81 2-oxoglutarate-dependent dioxygenase family protein (.1.2) AT1G11780 48 / 6e-06 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025260 [exp] 281 / 6e-92 AT3G14160 308 / 8e-102 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10009087 [exp] 158 / 2e-47 AT5G01780 176 / 1e-54 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Lus10020904 [exp] 104 / 2e-26 AT3G14160 46 / 5e-06 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10037023 [exp] 52 / 4e-07 AT1G11780 472 / 3e-168 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10015782 [exp] 51 / 7e-07 AT1G11780 473 / 8e-169 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G070100 [exp] 340 / 1e-113 AT3G14160 348 / 2e-115 2-oxoglutarate-dependent dioxygenase family protein (.1) Potri.016G132300 [exp] 281 / 1e-91 AT5G01780 307 / 1e-101 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Potri.003G171900 [exp] 52 / 3e-07 AT1G11780 468 / 3e-166 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10033471 pacid=23143454 polypeptide=Lus10033471 locus=Lus10033471.g ID=Lus10033471.BGIv1.0 annot-version=v1.0 ATGGATCACCTTTCCACTGCGGCCAGCAGCCGTGGGGGGAGAAGAAGAGGTGGTCGAAGCCCTTACCCAACCGGAAGGGGATCGTGGGCTACTCCTTCTC CTTCTCATCATCACCAGGTTGGAGGGGAAGGTAACTACGTTGATGAATCAAGTAGGAGAATGGGTGGATTATCCCTTGGTAGAGGAGGAGGAACTTCTCC CCAGATTTCTCCTCCTTCTTTCCATAGGGAGTCTGATCAGATACAGACGCCACCACCAAACAAAGTCGGGCTCCAACAAGATGATAAAGCTGCCAAGGCT AGTGTTAGCTATCCAGAGCAAGCTAACATAGAGCCGATGAAGAAGCTAGGTTTCGATATTTGCCAGCAGCCCAAGCCTGGAGGTGGTGTTAAACTGAACG CTTCTTTGTATACAAAGAACAGAGAAAAGCGTAATAGTCTGCGCAATATAGAAGGGCTTAATGGGCAAGTATTGAGGCCAGGGATGGTACTTCTCAAACA TTACCTCTCATTGGATACTCAGGTCAAGATTGTGAACCTATGTCGCCAACTTGGAGTGGGATCTGCAGGGTTCTACCAACCTGAATTCCGCAGTGGTGAA AAGATGCATCTGAAAATGATGTGCCTCGGCAGTAGCTGGGAACCCGACATAGACAAGTACGTAGAAAGCCGGGCGGTCGATGGTGCTAAACCACCTACCA TTCCTCAAGAGTTTATTCCGTTGGTTATGGATGCAATCAAGGATTCCCAAACCCTCATTGCAAAAACTTCTAAACCAGCAAGTGTGGGACGTGATGGCCT TCCATCGATGACACCAAGCATTTGCGTCGTGAATTTCTACACTTCGAGTGGGCGGCTAGGTCTTCATCAGGATAAAGCTGAAAGTCCAGAAAGTTTGCGG AAGGGGTTACCGGTGGTGTCTTTCTCCATCGGAGATTCAGCGGAGTTCCAGTATTCCGAACGAAGAGACGATGTAAACGCGGGTAAAGTGTTGCTGGAAT CTGGAGACGTATTGATATTTGGTGGAAGGTCAAGAAATATATTTCACGGTGTGACTTCTGTTAAGGCGAAAACTGCCCCGAAACTCTTGCTTGATCAAGC GAATCTTCGGGACGGACGTCTCAATTTGACCTTCAGGGAGTATTGA
AA sequence Show only first row Show all	>Lus10033471 pacid=23143454 polypeptide=Lus10033471 locus=Lus10033471.g ID=Lus10033471.BGIv1.0 annot-version=v1.0 MDHLSTAASSRGGRRRGGRSPYPTGRGSWATPSPSHHHQVGGEGNYVDESSRRMGGLSLGRGGGTSPQISPPSFHRESDQIQTPPPNKVGLQQDDKAAKA SVSYPEQANIEPMKKLGFDICQQPKPGGGVKLNASLYTKNREKRNSLRNIEGLNGQVLRPGMVLLKHYLSLDTQVKIVNLCRQLGVGSAGFYQPEFRSGE KMHLKMMCLGSSWEPDIDKYVESRAVDGAKPPTIPQEFIPLVMDAIKDSQTLIAKTSKPASVGRDGLPSMTPSICVVNFYTSSGRLGLHQDKAESPESLR KGLPVVSFSIGDSAEFQYSERRDDVNAGKVLLESGDVLIFGGRSRNIFHGVTSVKAKTAPKLLLDQANLRDGRLNLTFREY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	0	1
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	2.0	0.9333
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	7.3	0.9103
AT3G22430			unknown protein		Lus10041203 [exp]	9.2	0.8815
AT1G45976		SBP1	S-ribonuclease binding protein...		Lus10001131 [exp]	11.4	0.8721
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10022931 [exp]	11.6	0.8949
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	15.1	0.8937
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	15.8	0.8796
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	16.0	0.8974
AT4G27130			Translation initiation factor ...		Lus10039660 [exp]	17.5	0.9026
AT1G31870			unknown protein		Lus10034532 [exp]	19.0	0.8730

Compare expression of checked genes

Lus10033471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.