Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47570 275 / 2e-89 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020903 [exp] 587 / 0 AT1G47570 405 / 8e-138 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G137900 [exp] 328 / 4e-110 AT1G47570 612 / 0.0 RING/U-box superfamily protein (.1.2) Potri.T011501 [exp] 50 / 7e-08 AT1G47570 0 / 1 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 43 / 0.0002 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.010G168300 [exp] 41 / 0.0004 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.001G127100 [exp] 42 / 0.0005 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033472 pacid=23143548 polypeptide=Lus10033472 locus=Lus10033472.g ID=Lus10033472.BGIv1.0 annot-version=v1.0 ATGCCTGATCCAGAACCCAGCAACCGGAAGTTGCAGATCCACATAGATGCTGATAATGCTAAGTGCTGCATATGCTTAAGCATATGGCATGATGTTGTTA CAGTCGGCCCTTGCCTGCATAATTTCTGCAATGGGTGCTTCTCAGAATGGCTGAAGAGATCGCAGGAGAAACGTTCCAAAGTGTTGTGTCCTCAGTGCAG AGGAGTCGCACAGTTTGTAGGGAAAAATCACTTGCTGCAAGATTTAAAAGAGGAGATTGTTAAGTCTGATTCTTCACTAAAGCGATCAGATGAAGAAATT GCTCAGCTCGACTCCTATGCCTTGATAAAAACATGCATGGTTATCGAGGCTGGAAAGAAGCGCAAGCGTAACGGACCGCGTGTGGAATCAGATTTTAGAG ATGAGATGGATGAGGATTTATCTGCATATCTTGATGACCCGATTATTGATCCTCATTACGCTATCTATCTAGACACAATGGATCAAATGACTCCATGCGT ACAATGTGGCGTGGAGTATAATGGTTTTCGTTGCAATGGGAGCACCGTTCACATAGAATGTCATGCCTGTGGTGGAGAAATGCCTTTAAGAGCTGATTCT GGTGCACCTCAACACTGTTTAGGATGTGATAGAGCATTTTGTGGTGCTTACTGGCGGTGTCAGGGATTTAATGGAAATGGCTTCCGTGTTCCTTGCGGAC TAGATGTTTTGAAACCTATCTCTGCTCGTTCCATCTCTGGGATTCCACACACTGCACATGGGACAAATCAAGTTGAAAAGGATATCACGGAGAGTTGTAT TAGACAGATGGGAAGAACAATACCTGATGTTATCTCAGAGTGGATAGGAAAGTTGAACAACAGGGAAATTGGTATACCGCTCGCTATGTCTTTATTCAGT TTGTTAGCTTTATCATCCTTACCTTTTAGTGCTGTTACAACTGCTCTTTGTTTCACTTTCCAATTGTATTCAGTTCTTTTGTTTCTGAAGTTATCTCCTT AA
AA sequence Show only first row Show all	>Lus10033472 pacid=23143548 polypeptide=Lus10033472 locus=Lus10033472.g ID=Lus10033472.BGIv1.0 annot-version=v1.0 MPDPEPSNRKLQIHIDADNAKCCICLSIWHDVVTVGPCLHNFCNGCFSEWLKRSQEKRSKVLCPQCRGVAQFVGKNHLLQDLKEEIVKSDSSLKRSDEEI AQLDSYALIKTCMVIEAGKKRKRNGPRVESDFRDEMDEDLSAYLDDPIIDPHYAIYLDTMDQMTPCVQCGVEYNGFRCNGSTVHIECHACGGEMPLRADS GAPQHCLGCDRAFCGAYWRCQGFNGNGFRVPCGLDVLKPISARSISGIPHTAHGTNQVEKDITESCIRQMGRTIPDVISEWIGKLNNREIGIPLAMSLFS LLALSSLPFSAVTTALCFTFQLYSVLLFLKLSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	0	1
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	1.0	0.9276
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	1.4	0.9234
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	1.7	0.9200
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	2.0	0.9062
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	2.2	0.9002
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	3.5	0.8890
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	4.6	0.8784
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	6.0	0.8628
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	8.0	0.8290
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	12.5	0.8498

Compare expression of checked genes

Lus10033472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.