Plant FIBer expression Database

Lus10033474 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31870 620 / 0 PARG1, TEJ Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
AT2G31865 501 / 2e-173 PARG2 poly(ADP-ribose) glycohydrolase 2 (.1), poly(ADP-ribose) glycohydrolase 2 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020902
[exp]
1062 / 0 AT2G31870 655 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G145800
[exp]
675 / 0 AT2G31870 588 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
Potri.017G002000
[exp]
662 / 0 AT2G31870 615 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0223 MACRO PF05028 PARG_cat Poly (ADP-ribose) glycohydrolase (PARG)
Representative CDS sequence
>Lus10033474 pacid=23143348 polypeptide=Lus10033474 locus=Lus10033474.g ID=Lus10033474.BGIv1.0 annot-version=v1.0
ATGGAACATCGGCAAGACTTGAATTCGATTTTACCCTTCTTGCCAGTGGTTCTGCGATCTTCCAGTCTGTTCTGGCCTTCAGAAACAGTGGAAGCGATCA
AATCGCTCACACAAGGACCCAACGTCAGCGATGTCACCTCTGGAGAATCGCTTTTCAATTTCATTTCTGAGATAAGAAGTACTCTGAATCTTTCTTCACA
TACTCTTGCACTCTACACTGCAGAAGGTTATGCCCTCTTCTTCGACGAGCTGATCCCCCGTGTCGAGGCAGCAAAATGGTTTGAAGAAGTTCTTCCATCT
TTGGCGAATTTGCTTCTGGAGCTGCCTTCACTCTTAGAGTCGCACTACCAAAATGCAGATGACCTAATATCGGGGGATCTGCGTGGTGTTAAAACTGGTC
TCAGATTGTTGGGTCCTCAAGAAGATGGTGTGGTATTCCTTAGTCAGGAATTGATTGGTGCGCTCTTGGCATGTGCTCTATTTTCTATGTTTCCAGTTGA
TGATAGAGATGCAAATGATCTCCCGGTGATCAATTTTGATTACTTATTTGCGGGTCTATATAGCAGCTACAGGGAACACCAAGAAAACAAAATAAAATGC
ATCATGCACTATTTTGAAAGGATTTGCTCACTCAGACCTGTCGGCTTTGTGTCTTTTGAGCGGAAAGTGATCTGTCCGGAACAAGTTACAAAGGCTGGTT
TCTGGGGCCAATCTGTCACTCGCCTCTGCCCTTTTGAGGTGAGGCGAACAGGTCTCATAGAAGATCAATCTGATGGAGCTCTTGAAGTGGATTTTGCAAA
CAAGTATCTTGGAGGCGGTGCTCTTCACAGGGGATGTGTGCAGGAAGAGATCCGCTTCATGATTAATCCTGAATTAATTGCTGGCATGCTTTTCTTGCCG
TGCATGGAAGACAATGAGGCCATTGAAATCGTCGGTGCTGAAAGATTCTCAAATTATACCGGGTATGCATCTTCATTTCGTTTCAGTGGAGACCATATGG
ACCAAAAAGGTTTTGATGGCTGCAGGAGACGGAAAACTAGGATAGTTGCCATAGACGCATTATGCGACCCAAGGACAAGACAGTACAAAGTTGATTACCT
CCTTCGGGAAACTAACAAGGCATTCTGTGGCTTTTCTGTTGGATTGAAATGTGTCAATAATGGGGTTGAAAGAGATCAGCGTGAAAGGAATGACAGAGTC
TCCAACGTCATCTCTACGAATATGCTCCAGTCAGATGAACTTCCCTCCACTTCGTCAGACGTCGAAATGAATGATGCAGACTATGGGAACGAAAAGGTTA
AAAATTTCGACGGGAAAGGAAACTGCCATTTAGCCAATGAAGAGACAGTTGGGATAGCAACGGGCAATTGGGGCTGTGGAGCATTTGGTGGAGATCCACA
ACTAAAAGCTATGATTCAGTGGCTTGCAGCTTCTCAGGCCTCGAGACCATCCATTTTCTACTATACATTTGGCATTGAAGCATTGCAGAATTTAGATAAG
GTGGTAGAGTGGATTGTATCACATGAATGGGTGGTAGGAGAACTTTGGGATATGATGGTGGAATACTCATCCCAAAGGTATAATGGAAGAACCAAGCTTG
GCTTTCTTTCATGGTTGCTTCCGTCTTTGACAGAGATGCAGAAAGCTGACCAAGACAACCGAAGCTCAAATGTCCAGGACATGCCTAGCTAG
AA sequence
>Lus10033474 pacid=23143348 polypeptide=Lus10033474 locus=Lus10033474.g ID=Lus10033474.BGIv1.0 annot-version=v1.0
MEHRQDLNSILPFLPVVLRSSSLFWPSETVEAIKSLTQGPNVSDVTSGESLFNFISEIRSTLNLSSHTLALYTAEGYALFFDELIPRVEAAKWFEEVLPS
LANLLLELPSLLESHYQNADDLISGDLRGVKTGLRLLGPQEDGVVFLSQELIGALLACALFSMFPVDDRDANDLPVINFDYLFAGLYSSYREHQENKIKC
IMHYFERICSLRPVGFVSFERKVICPEQVTKAGFWGQSVTRLCPFEVRRTGLIEDQSDGALEVDFANKYLGGGALHRGCVQEEIRFMINPELIAGMLFLP
CMEDNEAIEIVGAERFSNYTGYASSFRFSGDHMDQKGFDGCRRRKTRIVAIDALCDPRTRQYKVDYLLRETNKAFCGFSVGLKCVNNGVERDQRERNDRV
SNVISTNMLQSDELPSTSSDVEMNDADYGNEKVKNFDGKGNCHLANEETVGIATGNWGCGAFGGDPQLKAMIQWLAASQASRPSIFYYTFGIEALQNLDK
VVEWIVSHEWVVGELWDMMVEYSSQRYNGRTKLGFLSWLLPSLTEMQKADQDNRSSNVQDMPS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G31870 PARG1, TEJ Sanskrit for 'bright', poly\(A... Lus10033474
[exp]
0 1
AT4G38380 MATE efflux family protein (.1... Lus10014440
[exp]
2.2 0.8227
AT1G10380 Putative membrane lipoprotein ... Lus10037078
[exp]
5.3 0.7967
AT1G23230 unknown protein Lus10016701
[exp]
5.5 0.8463
AT2G16940 Splicing factor, CC1-like (.1.... Lus10005059
[exp]
18.0 0.7972
AT1G27900 RNA helicase family protein (.... Lus10015812
[exp]
28.4 0.8319
AT5G05310 TLC ATP/ADP transporter (.1.2.... Lus10012891
[exp]
30.4 0.8124
AT1G23230 unknown protein Lus10035997
[exp]
31.0 0.8127
AT1G20670 DNA-binding bromodomain-contai... Lus10001391
[exp]
31.2 0.8221
AT2G39260 binding;RNA binding (.1) Lus10023481
[exp]
37.3 0.7646
AT2G25870 haloacid dehalogenase-like hyd... Lus10005169
[exp]
39.5 0.8008

Lus10033474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.