Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31840 336 / 3e-116 MRL7-L Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) AT4G28590 125 / 4e-34 MRL7 Mesophyll-cell RNAi Library line 7, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020901 [exp] 434 / 3e-155 AT2G31840 358 / 9e-124 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Lus10024925 [exp] 115 / 4e-30 AT4G28590 336 / 1e-114 Mesophyll-cell RNAi Library line 7, unknown protein Lus10022899 [exp] 113 / 2e-29 AT4G28590 322 / 3e-109 Mesophyll-cell RNAi Library line 7, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145700 [exp] 310 / 5e-106 AT2G31840 301 / 8e-101 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Potri.014G195600 [exp] 114 / 4e-30 AT4G28590 355 / 4e-122 Mesophyll-cell RNAi Library line 7, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033475 pacid=23143286 polypeptide=Lus10033475 locus=Lus10033475.g ID=Lus10033475.BGIv1.0 annot-version=v1.0 ATGAATGCTGATGAAAGACGTGAATGGAGGAGACAAATTAGAGAAGTTCTTGCCAAATATCCTGATAATGAGGAAGATCTCGACCCGGAAGAGAAGAAGG CAAAGATGCAGAAACTTCTGGCTGATTATCCCCTTGTTGTCAACGAAGAGGATCCCAAGTGGCCTGAAGATGCTGATGGATGGGGGTTCAGTTTAGGCCA ATTCTTCGACAAGATTTCTATCAAGAATGTCAAGAAGGATGATGATGATGACGACAGTCGTAAGGAAATAGTATGGCAAGATGACGACTATATCCGTCCC ATCAAGGACATCAAAACTGCAGAATGGGAAGAAATTCTTTACAAAGATATCAGTCCCTTGGTTATACTAGTACATAATCGCTATAGAAGGCCGAAAGAAA ACGAAAAAATTCGTGAGGAGTTGGAGAAAGCTGTGCATATCATATGGAACTGCAGGTTGCCTTCACCAAGATGTGTTGCTGTTGATGCTGTTGTTGAAAC CGACTTAATTTCTGCTCTTAAAGTTTCTAAATTCCCTGAAGTCATTTTTAGTAAAGCTGGAAGGGTCTTATACCGTGAGAGAGAAATTCGAACAGCAGAT GAGTTCTCAAAGATAATGGCCTACTTCTACTATGGAGCAGCCAAGCCACCTTGCTTAGACAAGATTGATGATGTCCAGGAATTGATCCCGGCTGTACAAG TCAGTCACAATCAGTGA
AA sequence Show only first row Show all	>Lus10033475 pacid=23143286 polypeptide=Lus10033475 locus=Lus10033475.g ID=Lus10033475.BGIv1.0 annot-version=v1.0 MNADERREWRRQIREVLAKYPDNEEDLDPEEKKAKMQKLLADYPLVVNEEDPKWPEDADGWGFSLGQFFDKISIKNVKKDDDDDDSRKEIVWQDDDYIRP IKDIKTAEWEEILYKDISPLVILVHNRYRRPKENEKIREELEKAVHIIWNCRLPSPRCVAVDAVVETDLISALKVSKFPEVIFSKAGRVLYREREIRTAD EFSKIMAYFYYGAAKPPCLDKIDDVQELIPAVQVSHNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10033475 [exp]	0	1
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	7.9	0.9306
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Lus10001378 [exp]	13.3	0.8996
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	14.0	0.9179
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	14.1	0.9240
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	15.0	0.9008
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	16.4	0.9192
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	16.9	0.9211
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	19.9	0.9097
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10010636 [exp]	20.7	0.9010
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	25.8	0.9078

Compare expression of checked genes

Lus10033475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.