Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020900 [exp] 418 / 8e-151 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145600 [exp] 305 / 5e-106 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033476 pacid=23143521 polypeptide=Lus10033476 locus=Lus10033476.g ID=Lus10033476.BGIv1.0 annot-version=v1.0 ATGGCTGGCCTGCTCAAGAACTCACTCACTCTCCTCTACATGTTTAGCATCATGGCATCAATGTCGTCCCACACTTTCGCCGATGGCCACAAAAGCGACC ATCTTTGCAGGCAGTGTCCCATGGTAGAGAAGATGGAGTGTCCCTCGAGTTCCGCCTTCCCCCACATGACAGCTTTCGACAATAGTCTTGTCGCGGGAGC ATTGCAATCCGACTTGATCGGTGCCAACGACAGAGGGATTTACTCTGTGCCGAATGTTAAAGGCGGTACCTCGAGCAAACACAATGCTTATTATGGTTGG CAATCAAATTCTGGTTCTGCTTCTGGTTACCACAGGTTCAGCAACTACATGGACAAATGCTCCGGTGGACGGAACTATCTAACTGTCGACAAGGCTGGTA AGGTGGGACTTCGATCGTTGAAGTCACTCAAAAGCTTAGCAGAAGCTGACTGGAAATCAATCAACCCTCCGACAAACCTAAACCATAGAGAATACAGATT TTGGATGTCTCATAGTACAGGGAAATGCCTTACAGTTCTGGGAGCACATGGACAGAAGAAACCTGTAGGTGTAGCTGATTGCAAATTCGATGGCTCCGAT ACCAAGCAGCTCTTTGCCTTCCGGTTCCACTACGATAAGGCCTTCTGTGGTTGTGGTGTATACAATAACTGA
AA sequence Show only first row Show all	>Lus10033476 pacid=23143521 polypeptide=Lus10033476 locus=Lus10033476.g ID=Lus10033476.BGIv1.0 annot-version=v1.0 MAGLLKNSLTLLYMFSIMASMSSHTFADGHKSDHLCRQCPMVEKMECPSSSAFPHMTAFDNSLVAGALQSDLIGANDRGIYSVPNVKGGTSSKHNAYYGW QSNSGSASGYHRFSNYMDKCSGGRNYLTVDKAGKVGLRSLKSLKSLAEADWKSINPPTNLNHREYRFWMSHSTGKCLTVLGAHGQKKPVGVADCKFDGSD TKQLFAFRFHYDKAFCGCGVYNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033476 [exp]	0	1
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	1.4	0.9284
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	1.4	0.9299
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	1.7	0.9230
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	3.2	0.8752
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	3.5	0.8860
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	4.0	0.9045
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	4.1	0.8626
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	4.5	0.9026
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Lus10024973 [exp]	5.1	0.8421
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	5.7	0.8835

Compare expression of checked genes

Lus10033476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.