Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63870 588 / 0 PP7, ATPP7 serine/threonine phosphatase 7 (.1.2.3) AT1G48120 438 / 2e-141 hydrolases;protein serine/threonine phosphatases (.1) AT5G10900 314 / 6e-101 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42810 191 / 3e-55 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT2G42500 139 / 1e-37 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT5G43380 136 / 2e-36 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT3G58500 136 / 3e-36 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT3G05580 136 / 4e-36 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 135 / 5e-36 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT4G26720 135 / 5e-36 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020898 [exp] 804 / 0 AT5G63870 608 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Lus10031381 [exp] 199 / 6e-59 AT2G42810 699 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Lus10039185 [exp] 137 / 2e-36 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 136 / 2e-36 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 135 / 7e-36 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016576 [exp] 135 / 2e-35 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10004989 [exp] 134 / 2e-35 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016489 [exp] 133 / 3e-35 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10033122 [exp] 132 / 6e-35 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456600 [exp] 636 / 0 AT5G63870 605 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Potri.011G145300 [exp] 625 / 0 AT5G63870 580 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Potri.001G196600 [exp] 363 / 1e-117 AT5G10900 372 / 2e-119 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.014G141800 [exp] 196 / 3e-56 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.003G217900 [exp] 140 / 1e-37 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 140 / 1e-37 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.006G196100 [exp] 138 / 4e-37 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.016G062000 [exp] 137 / 9e-37 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.001G245700 [exp] 137 / 1e-36 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.011G092200 [exp] 136 / 2e-36 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10033478 pacid=23143319 polypeptide=Lus10033478 locus=Lus10033478.g ID=Lus10033478.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCAATTTCCCCTCCTCCGGCCGGTCCAGATCCGCAACCTCACGCCATTCCAGCCGACAATTCCGCCGTCGCCGAAACTACCGCCGATTCAC CGCCTGAAGACCTTATCTGCTCCACCACCACCACCGCTTCCTCATCATCATCACCTCCATCCGATCAACAACTCCCTTCCCCAGTTTCCCCAGACATCCC TATCTCCTGGCCTCCCGACGGCCAGCTTTCATCGGAGTGGATCGCACTTTTGATTTCCACCTTCGACTGGTCTTCTCGGAACGTTGCTCCTTCTCGATTC GATTCAGTGCTTCCCATCCCTGTATTCGACGCCCTGGTACTCGCAGCGTCGAAGCTTCTCCATAAGGAGCCGAATTGCGTCTCAATCGGGGATTTGAATT CCGAATCTACTGTTATCGTGGTCGGCGATGTTCATGGCCAGCTCCACGACGTGCTTCTCCTGTTCAGAGAAGCTGGTTTTCCTAGTGAGAATCGTTACTT TGTGTTCAATGGAGACTACGTTGATCGGGGAGCTTGGGGGCTCGAGACTTTCTTAATCTTACTGGCTTGGAAGGTGTTTATGCCGCACAGGGTGTTTCTC TTGCGCGGGAACCATGAATCAAAGTACTGTACATCAGTTTATGGATTTGAGAAGGAAGTGTTGTCCAAGTATGGGGATAAAGGTAAGCATGCTTATAGGA AGTGTTTGGGATGCTTTGAAGGGCTTCCTTTGGCTTCCATTATAGCAGGGCGTGTATACACTGCTCACGGTGGACTTTTTCGAAGCAACCCTGTGATCAC CACTCCTCCAAAACCAAAGAGGTCGAAACGAAAGAAGAACCAAAAAGTGCATGTAAACCGCGAGACTGCCAGTAGCTTAGCTCTTGGTTCTTTCGTCGTA TTGTCTAGAGCTCGAAGGTCAGTTCTTGACCCCCCATGGGAAGGACAGAACCTAATCCCTGGTGATGTTCTCTGGTCGGATCCGACAATGAAACCTGGAC TCTCGCCAAATAAAGAGCGAGGGATCGGCTTGCTTTTTGGACCCGATTGTACTGAAAGCTTTCTGAAGAGAAATCAGTTAAAGCTAATCATCAGGTCGCA TGAAGGTCCTGATGCTAGAGAAAAAAGGCCTGGTCTTGGCCAAATGGACAAGGGCTATACCATTGATCATGTTACAGAGTCTGGGAAGCTTATTACTGTG TTTAGTGCTCCAGACTACCCACAGTTTCAGGCAACAGATGAGAGACACAATAACAAAGGCGCCTACATTGTTCTGAAACCGCCGGATTTCGATGAACCAG AGTTCCATAGTTTTGAAGCAGTAACTCCAAGACCTCAGGTGAATGCGTATTATGACTTTGTAGAATCCATCGACTCTGATGAAGATCTAGACTTGGCGTC AATGGCGAATACTGATTAG
AA sequence Show only first row Show all	>Lus10033478 pacid=23143319 polypeptide=Lus10033478 locus=Lus10033478.g ID=Lus10033478.BGIv1.0 annot-version=v1.0 MSSPISPPPAGPDPQPHAIPADNSAVAETTADSPPEDLICSTTTTASSSSSPPSDQQLPSPVSPDIPISWPPDGQLSSEWIALLISTFDWSSRNVAPSRF DSVLPIPVFDALVLAASKLLHKEPNCVSIGDLNSESTVIVVGDVHGQLHDVLLLFREAGFPSENRYFVFNGDYVDRGAWGLETFLILLAWKVFMPHRVFL LRGNHESKYCTSVYGFEKEVLSKYGDKGKHAYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSNPVITTPPKPKRSKRKKNQKVHVNRETASSLALGSFVV LSRARRSVLDPPWEGQNLIPGDVLWSDPTMKPGLSPNKERGIGLLFGPDCTESFLKRNQLKLIIRSHEGPDAREKRPGLGQMDKGYTIDHVTESGKLITV FSAPDYPQFQATDERHNNKGAYIVLKPPDFDEPEFHSFEAVTPRPQVNAYYDFVESIDSDEDLDLASMANTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10033478 [exp]	0	1
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	2.4	0.8221
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10016140 [exp]	11.2	0.7959
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	14.6	0.8145
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10033382 [exp]	15.5	0.7314
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011089 [exp]	23.6	0.7965
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10019777 [exp]	25.7	0.7061
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	29.6	0.8097
AT4G38040			Exostosin family protein (.1)		Lus10012723 [exp]	32.6	0.7884
AT4G26455		WIP1	WPP domain interacting protein...		Lus10027087 [exp]	33.4	0.6930
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	35.7	0.7936

Compare expression of checked genes

Lus10033478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.