Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09300 558 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G21400 528 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G34780 297 / 2e-98 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G59900 129 / 1e-33 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 127 / 4e-33 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 103 / 4e-24 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020895 [exp] 744 / 0 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10028648 [exp] 533 / 0 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10018945 [exp] 527 / 1e-178 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10000772 [exp] 368 / 4e-127 AT1G21400 417 / 1e-145 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10010728 [exp] 124 / 6e-32 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 122 / 8e-32 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 123 / 2e-31 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10013295 [exp] 122 / 4e-31 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 98 / 4e-22 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064000 [exp] 583 / 0 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G185400 [exp] 516 / 0 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 505 / 3e-178 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Potri.010G038400 [exp] 125 / 2e-32 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.008G192500 [exp] 125 / 2e-32 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 98 / 2e-22 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Lus10033480 pacid=23143265 polypeptide=Lus10033480 locus=Lus10033480.g ID=Lus10033480.BGIv1.0 annot-version=v1.0 ATGTGTAGGGTTGGTGAGCTTCAGAAATTCAACTTGCTGGGAGGGGAAGTTGCATATACCTCTCGGATGAGTTTCACATCCGAATCTCCGGAGGAGCGGG TTCCATGTTACCGTGTACTTGACGATAATGGTCAGCTAATCGACTCTGGTAACTTTGCTGGGAGACAAGGAAGGATTTCATTCTACGTTACTACTACCGG AGAGGAGGCAATCAACATTGCATCAGCAGCTGCACTCAAGATTGATGATTTCATTGTCCCGCAGTATCGAGAACCAGGAGTTCTCTTGTGGCGCGGCTTC ACCCCTTGCGATTTTGCAAACCAATGCTTTGTCAACAAATTTGATGGTGGTAAAGGCAGGCAGATGCCTGTGCATTATGGATCGAAACAGCTTAATTACT TCACCGTGGCATCGACAATTGCTTCGCAACTTCCTCATGCTGTGGGTGCTGCATATTCTTTGAAGATGGATGGAAAAGATGCTTGTGCTGTCAGTTACTT TGGTGATGGCGGTTCCAGTGAGAGCATGCCTCTCCGTGCACCTAAGGGAGATTTCCATGCAGCTTTAAACTTTGCTGCGGTTATGGAAGCTCCGGTCATA TTTATCTGCCGGAACAATGGATGGGCTATTAGTACCCCAGCTTCAGAACAGTTTCGAAGTGATGGAATAGTGGTTAAAGGGAAAGCCTATGGAGTCCGCA GCATCCGCGTAGATGGTAATGACGCTCTTGCAATGTACTCTGCAGTTCGTTCTGCTCGCGAAATGGCAATAACTGAACAAAAACCCATCCTGATTGAGGC TGTAACATATCGAGTGGGGCATCATTCCACTTCAGACGATTCCACCAAGTATCGTCTACTAGAAGAGATTGAATGGTGGCAAATGGCACGGAACCCTCTC GCCTTATACCGAAAGTGGCTTGAGAGCAACGGTTGGTGGAACAGTGAGCTCGAGGCAGACCTTCGAAGCAACACGAGGAAGGAGCTGTTAAACGCGATAC AAGTAGCAGAACGAGTGAAGAAGCCACCAGTTGAGGATTCGTTTACAGATGTATATGATACGGTCCCTTCGAACCTGTGCGAGCAAGAGAAGTTGCTGCA AGAGTCTGTCGCGAGATACCCGCAAGACTATCCCGCTGATGTTCCTCTCAAGGCCACTTCTTGA
AA sequence Show only first row Show all	>Lus10033480 pacid=23143265 polypeptide=Lus10033480 locus=Lus10033480.g ID=Lus10033480.BGIv1.0 annot-version=v1.0 MCRVGELQKFNLLGGEVAYTSRMSFTSESPEERVPCYRVLDDNGQLIDSGNFAGRQGRISFYVTTTGEEAINIASAAALKIDDFIVPQYREPGVLLWRGF TPCDFANQCFVNKFDGGKGRQMPVHYGSKQLNYFTVASTIASQLPHAVGAAYSLKMDGKDACAVSYFGDGGSSESMPLRAPKGDFHAALNFAAVMEAPVI FICRNNGWAISTPASEQFRSDGIVVKGKAYGVRSIRVDGNDALAMYSAVRSAREMAITEQKPILIEAVTYRVGHHSTSDDSTKYRLLEEIEWWQMARNPL ALYRKWLESNGWWNSELEADLRSNTRKELLNAIQVAERVKKPPVEDSFTDVYDTVPSNLCEQEKLLQESVARYPQDYPADVPLKATS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09300			Thiamin diphosphate-binding fo...		Lus10033480 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10009201 [exp]	5.8	0.6805
					Lus10027391 [exp]	12.2	0.6918
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	15.2	0.6014
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	21.2	0.6514
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	27.0	0.6732
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	29.5	0.6516
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10023052 [exp]	35.3	0.6078
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	36.6	0.6468
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10041597 [exp]	47.1	0.6412
					Lus10026259 [exp]	51.9	0.6238

Compare expression of checked genes

Lus10033480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.