Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64030 816 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 782 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 768 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 730 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 507 / 5e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 493 / 2e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 468 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 413 / 2e-134 Putative methyltransferase family protein (.1) AT1G77260 400 / 7e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 395 / 3e-127 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020894 [exp] 1201 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 863 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 819 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 814 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 814 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 795 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028354 [exp] 704 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 685 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025976 [exp] 684 / 0 AT3G51070 964 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104000 [exp] 856 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 852 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 793 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 791 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 741 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 710 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 529 / 5e-180 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 480 / 1e-159 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 407 / 2e-132 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 399 / 4e-129 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10033481 pacid=23143490 polypeptide=Lus10033481 locus=Lus10033481.g ID=Lus10033481.BGIv1.0 annot-version=v1.0 ATGGCACAAGCGAAGTACACTAGAGTAGACACCAAGACCAGCACCACCAGCAACAGCAGACGACAGTCATCAAGCTATTGGTCAACAGTGACCATTGTGG TGTTTGTAGCTCTATGTTTGGTTGGGGTGTGGATGATGACATCTTCATCTCTCATTCCTGGTCTAAACCTTGACGTGCCTGTCCAAGAAACTGCCAAGAA CGACGTGAAAGACCAAGCCGGTCTTGTTGTGGATGATGCAAAGAAAGCAGAAGATGATAAGGAGAAGAAACTAGAAGAAACATTTCCACAGAAGGCTGAG GAGAAACCAGAACCGAAGACTGAGGAGAAACCTGAAGACAAACCCGAAGACAAACCTGAAGAGAAACCAAAGGTTCAGCCTTATGAAGAAGAGCCTCCAT CTAATGATGGACAAAGTACAAACACAAGATTGAACGATGCTGCACCACAAGTAGACTCAAAGGAGAGTACTGGTTCTGTTGATAATGAGAACAAATCTGA TTCTATTGATAACGATAATAAGGCATCGTATGATAAACCAGACGATACGAAATTTGCGGAGGAGGAAAAAGGGGTTGAGAAAGATAGCAAGGAAGTCAAG AATCAAAGTGCAGTTGAGCAGTTTCCATCCGGAGCACAGGCGGAGCTTACGAACGAAACCTCCACCGAGAATGGATCGTGGTCAACTCAGGCAGCGGAAT CAGAAAACGAGAAGGAAAGCCAAGAGTCTTCTAAAGAGCAACAACTTGTACAGAGTAATTGGAAGTTATGCAATAGCACAGCTGGACCTGATTTCATTCC GTGTCTTGATAACTGGAAAGCAATCCAGAGTCTTAGATCTACTAAACATTACGAACATCGAGAGCGACATTGTCCGGAAGAGCCTCCAACCTGCCTTGTT CCGATTCCAGAAGTTCTGCAGATTTGGTACTCAAATGTTCCCCACCCGAAACTTGTTGAATATAAGGGCCACCAGAATTGGGTGAAAGTTAATGGTGATT ACCTAACTTTCCCTGGTGGGGGTACTCAGTTCAAGCATGGCGCTCTCCACTATATCGACTTTATAAATGAGAATGTTCCCGACATTGCATGGGGAAAGCG TAGTCGTGTAGTCTTGGATGTCGGATGCGGTGTTGCTAGTTTTGGAGGATATCTCTTCGACAGAGATGTTATCGCGATGTCGTTTGCCCCTAAAGACGAG CATGAAGCTCAAATTCAGTTTGCTCTTGAGAGAGGAATTCCTGCCATATCTGCTGAAGGCGGTAAACTTCTTCTGGAATTGAATCGGGTGTTGAGACCGG GCGGGTATTTTGTGTGGTCTGCTACTCCTGTATATCAGAAACTTCCTGAAGACAAAGAAATATGGAAAGCCACGAGCGAGTTATTGGATTCGATATGCTG GGAACGTGTGGCTAGAGTCAAGGACAGACTGAATGCAGTCGGTATAGCTATATACAGGAAGCCGATTAATAATACGTGCTATGAGAAGAGATCGGTGCCA CAACCTCCAATGTGCGAAGCATCTGATGATCCTAATGCCGCCTGGAAGGTGCCTCTACAAGCATGCATGCATAAGTTGCCGGCTGATTCGTTTGAACGCG GGTTTCAATGGCCTCAACAATGGCCAGCTAGATTGGACAAGACTCCATACTGGATGTTAGGTTCAGAAATGGGAGTTTACGGCAAACCTCAACCGGAAGA CTTTGTTGCTGATTATGAGCATTGGAAACGAGTTGTTTCCAAGTCATATATCAATGGGATGGGAATAAACTGGGGAAATGTCAGGAATGTTATGGACATG AGAGCTATCTATGGAGGGTTCGCGGCTGCTTTGAAGGATATGAACTTATGGGTCATGAATGTTGTCCCGATCGATTCCCCTGATGTCCTGCCCGTAATTT ACGAGCGCGGACTCTTCGGTATCTATCACGATTGGTGCGAGTCATTCAGCACATACCCTAGGTCGTACGATCTTCTTCATGCTGATCATCTTTTTTCCAG GATCAAGCAAAAGTGCAATGTAGTTCCTCTAATTGTGGAGGTTGATCGGATCCTGAGGCCGGAAGGAAAGCTAATAGTAAGAGACAACGCCGAGACTGTG AGTGAAGTCGAAAAGATTCTAAGGTCGATGAAGTGGGAGATCCGGATGACGTATAGTAAAGACGGTGAAGGGTTGCTTTCTGCGCAGAAGACAACGTGGC GGCCTAAGGAATCTGAAACTCTAGATTATGCTATCATGAAATGGCCTAGAACTCCTTAG
AA sequence Show only first row Show all	>Lus10033481 pacid=23143490 polypeptide=Lus10033481 locus=Lus10033481.g ID=Lus10033481.BGIv1.0 annot-version=v1.0 MAQAKYTRVDTKTSTTSNSRRQSSSYWSTVTIVVFVALCLVGVWMMTSSSLIPGLNLDVPVQETAKNDVKDQAGLVVDDAKKAEDDKEKKLEETFPQKAE EKPEPKTEEKPEDKPEDKPEEKPKVQPYEEEPPSNDGQSTNTRLNDAAPQVDSKESTGSVDNENKSDSIDNDNKASYDKPDDTKFAEEEKGVEKDSKEVK NQSAVEQFPSGAQAELTNETSTENGSWSTQAAESENEKESQESSKEQQLVQSNWKLCNSTAGPDFIPCLDNWKAIQSLRSTKHYEHRERHCPEEPPTCLV PIPEVLQIWYSNVPHPKLVEYKGHQNWVKVNGDYLTFPGGGTQFKHGALHYIDFINENVPDIAWGKRSRVVLDVGCGVASFGGYLFDRDVIAMSFAPKDE HEAQIQFALERGIPAISAEGGKLLLELNRVLRPGGYFVWSATPVYQKLPEDKEIWKATSELLDSICWERVARVKDRLNAVGIAIYRKPINNTCYEKRSVP QPPMCEASDDPNAAWKVPLQACMHKLPADSFERGFQWPQQWPARLDKTPYWMLGSEMGVYGKPQPEDFVADYEHWKRVVSKSYINGMGINWGNVRNVMDM RAIYGGFAAALKDMNLWVMNVVPIDSPDVLPVIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSRIKQKCNVVPLIVEVDRILRPEGKLIVRDNAETV SEVEKILRSMKWEIRMTYSKDGEGLLSAQKTTWRPKESETLDYAIMKWPRTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10033481 [exp]	0	1
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10037095 [exp]	7.1	0.6802
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	7.2	0.7304
AT4G34540			NmrA-like negative transcripti...		Lus10023558 [exp]	10.5	0.6960
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10011348 [exp]	12.7	0.6123
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	17.9	0.7100
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	27.2	0.6723
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	29.5	0.6932
AT1G78810			unknown protein		Lus10028833 [exp]	42.4	0.5970
AT4G02210			unknown protein		Lus10010304 [exp]	42.7	0.5869
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	45.2	0.6393

Compare expression of checked genes

Lus10033481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.