Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13680 1486 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT5G13000 1028 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G31960 1012 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G05570 999 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT3G14570 798 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G59100 743 / 0 ATGSL11 glucan synthase-like 11 (.1) AT5G36870 732 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT1G06490 698 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT4G03550 545 / 7e-171 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT2G36850 488 / 2e-149 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020893 [exp] 1743 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10002097 [exp] 1653 / 0 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10039199 [exp] 1004 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10003920 [exp] 984 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10037469 [exp] 952 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10013744 [exp] 897 / 0 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10042478 [exp] 813 / 0 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2) Lus10001424 [exp] 733 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10020751 [exp] 490 / 2e-161 AT3G59100 934 / 0.0 glucan synthase-like 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058300 [exp] 1541 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.003G214200 [exp] 1022 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G012200 [exp] 1017 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G230000 [exp] 976 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.011G095100 [exp] 769 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.002G058700 [exp] 744 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.005G203500 [exp] 729 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.013G131300 [exp] 521 / 4e-162 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.015G089300 [exp] 496 / 2e-152 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.001G011900 [exp] 479 / 2e-146 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10033482 pacid=23143425 polypeptide=Lus10033482 locus=Lus10033482.g ID=Lus10033482.BGIv1.0 annot-version=v1.0 ATGAACTCTGGTCTTTTCATTTCAGGACGCTTGAGGAGGATTTCGAGCTCTAGGACGACAGCCTTGTTGATTTCCATCATCGGTCGATTTTATGCATTTG AAAAGGCACATAGGCTGGATCCCAACTCCAGTGGACGTGGTGTGAGGCAATTCAAAACAGCGTTATTGCAAAGAGTAGAAAGGGAAAATGCTTCCAGTAT CGCCTCGCGGGTGAAAAAAACGGATGCGCGCGAAATCCAGAGCTTCTATTACCAATACTATAAACAATATGTTGAAGCTCTCAAGCAGGGTGACCAGGCA GACAGAGCTCAACTTGGCAAGGCCTATGAGACAGCAGGAGTTCTTCTTGAAGTTCTTTACGCCGTCAATAAGACTGAGAAAGTTGAAGAAGTTGCCCCTG AGATTATTGCTGCTGCTAGAGACATCCAAGAAAAGAAGGAAATTTATGCCCCGTACAACATTCTTCCCCTGGACTCTGCTGGAGCTTCTCAGTCAATCAT GCAACTCGAGGAGGTCAAGGCTGCTGTTGCAGCTCTGTGGAACACCCGAGGCTTGTCATGGCCCTCATCTTTCGAGCAGCACAGGCAGAAAGCTGGGGAT CTGGACCTTCTTGACTGGTTAAGGGCCATGTTTGGCTTCCAGAGGGACAGTGTTAGGAACCAGAGGGAGCATTTGATATTGCTACTTGCCAATAATCATA TCAGGCTCAACCCCAAGCCTGAACCTCTTAACAAGGCACGTGCTCTTGATGAAAGAGCGGTAGACGCAGTTATGCATAAGATCTTCAAAAACTATAAGAA CTGGTGCAAGTTCTTGGGGCGAAAACACAGTTTACGGCTTCCCCAAAGCCAGCCAGAAATCCAACAAAGAAAAATACTTTACATGGGTTTGTATCTTCTT ATCTGGGGTGAAGGAGCTAATGTGCGGTTCATGCCAGAATGTCTGTGCTACATCTTTCACAATATGGCCTATGAACTCCATGGCCTGTTGGCTGGAAATG TCAGCATTGTAACTGGAGAAAATATTAAGCCTTCTTACGGTGGAGATGATGAGGCATTCCTGAGGAAAGTTATAACACCAATTTATCGTGTAATTGCAAA GGAAGCAAGCAAGAGTCAAAACGGCACAGCTTCTAGTACAGAATGGTGCAACTATGATGATTTGAATGAGTATTTCTGGTCATCTGATTGCTTCTCCCTT GGTTGGCCTATGCGGGATGATGGTACATTCTTTATATCAACACGTGATGCAGCTAAGGGCAAGAAAACTCCTGAAGCGAATTCTGGAAGCACAGGAAAAT CGTATTTTGTTGAAACCAGAACCTTTTGGCACATATTTCGAAGCTTTGACAGATTGTGGACTTTTTATGTGCTGGCCTTTCAGTTAATGATCATCTATGC CTGGAGCGGAGTAGAGATACAAAATATACTTAGAAGAGACGTGCTGTATTACTTATCAAGTATCTTCATCACTGCGGCATTTCTTCGACTCCTTCAGAGC ATTCTAGATCTTGTTCTCAATTTTCCTGGATACCATAGGTGGAAATTTACTGATGTGCTGAGGAACATTCTTAAGATCATTGTTAGTTTTGCATGGGCTG TTATTCTTCCACTTTGTTATACCGGAAGCTTTAAGCAAGTTATTGGCTTTGCAAATGGAATGACTTTCCTCCGCACTGTGAAGAGTATTCCTCCAATATA CTTGCTAGCTGTAGTCATATACATGACTCCCAATATCCTGGCGGCTGCATTATTCATCTTCCCCATGCTCCGAAGATGGATAGAGAACTCAGACTGGCTC ATTATTAGATTACTATTGTGGTGGTCACAGATAAAGCCCCTAGTAAAACCAACAAAAGACATAATGAATATTAGACATGTAGAGTATACCTGGCATGAGA TTTTCCCTTATGCCAAGCACAATTATGGAGCTGTACTGTCACTCGTGGCACCAACAATCTTGGTCTATTTTATGGATACACAAATTTGGTATTCTATATT CTCAACCCTATATGGAGGCTTTGAGGGAGCAGTTGATCGCCTAGGAGAGATACGAACTCTGGGTATGCTGAGATCACGGTTTCAGTCACTGCCAGGTGCA TTTAATGCTTTTCTGGTGCCTTCTGACAAGAAACGGAGAAAGGGATTCTCGCTGTCAAAGAGATTTGCTGAGGTTTCAGCAAATAGAAGAAGTGAAGCTG CAAAATTCGCCCAGTTATGGAATGAAGTGATTACCAGTTTCCGAGAAGAAGATCTTATCAGTGACAGGAAAGGCTACACAACTGAGATAGATAATGTCAT TAAAGGCGTTTCCCTCACTTGTTTTAACATTGAAGTGATCCCTATAGCTCTAAATATGGCAGCCCAGTTCCGATCAAAGGACTCCGACTTATGGAAACGT ATATGTGCGGATGAGTATATGAAATGTGCCATCATCGAGTGTTATGAATCGTTCAAACAAGTCCTCAATATTTTGGTTATTGGGGAGAATGAAAAAAGGA TAATCGGCATCATCATCAAAGAAATAGAGAGTCATGTATCAAAGGGCACACTTCTTGCAAATTTCAGAATGGCTTCGTTACCAGCTCTATGTGAAAAAGT TGTGGTGCTAGTGGGAATCCTGAAAGATGGTGATCCTTCAAAGAGAGATAATGTGGTATTGTTGATGCAAGACATGTTAGAATTAGTTACCCGTGATCTG ATGGTGAACGAGAACCGTGAATTAGTAGATGTCGGACACAGTGGCAAGGATTCTGGAAGACAACTCTTTGCTGGTACTGATCCGAGACCTGCTATTGTGT TCCCTCCTCCTGTTACTGCACAGTGGGATGAACAGATAAGACGACTTCATCTTCTTTTGACGGTAAAGGAATCTGCCATGGATGTACCAGCGAACCTTGA AGCACGAAGAAGGATTTCCTTTTTCACAAATTCCTTGTTCATGGATATGCCTCGCGCTCCACGCGTCCGCAAAATGCTCTCATTCAGGAATAGTAATAAG AGTTTTCCTAGTTGA
AA sequence Show only first row Show all	>Lus10033482 pacid=23143425 polypeptide=Lus10033482 locus=Lus10033482.g ID=Lus10033482.BGIv1.0 annot-version=v1.0 MNSGLFISGRLRRISSSRTTALLISIIGRFYAFEKAHRLDPNSSGRGVRQFKTALLQRVERENASSIASRVKKTDAREIQSFYYQYYKQYVEALKQGDQA DRAQLGKAYETAGVLLEVLYAVNKTEKVEEVAPEIIAAARDIQEKKEIYAPYNILPLDSAGASQSIMQLEEVKAAVAALWNTRGLSWPSSFEQHRQKAGD LDLLDWLRAMFGFQRDSVRNQREHLILLLANNHIRLNPKPEPLNKARALDERAVDAVMHKIFKNYKNWCKFLGRKHSLRLPQSQPEIQQRKILYMGLYLL IWGEGANVRFMPECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSYGGDDEAFLRKVITPIYRVIAKEASKSQNGTASSTEWCNYDDLNEYFWSSDCFSL GWPMRDDGTFFISTRDAAKGKKTPEANSGSTGKSYFVETRTFWHIFRSFDRLWTFYVLAFQLMIIYAWSGVEIQNILRRDVLYYLSSIFITAAFLRLLQS ILDLVLNFPGYHRWKFTDVLRNILKIIVSFAWAVILPLCYTGSFKQVIGFANGMTFLRTVKSIPPIYLLAVVIYMTPNILAAALFIFPMLRRWIENSDWL IIRLLLWWSQIKPLVKPTKDIMNIRHVEYTWHEIFPYAKHNYGAVLSLVAPTILVYFMDTQIWYSIFSTLYGGFEGAVDRLGEIRTLGMLRSRFQSLPGA FNAFLVPSDKKRRKGFSLSKRFAEVSANRRSEAAKFAQLWNEVITSFREEDLISDRKGYTTEIDNVIKGVSLTCFNIEVIPIALNMAAQFRSKDSDLWKR ICADEYMKCAIIECYESFKQVLNILVIGENEKRIIGIIIKEIESHVSKGTLLANFRMASLPALCEKVVVLVGILKDGDPSKRDNVVLLMQDMLELVTRDL MVNENRELVDVGHSGKDSGRQLFAGTDPRPAIVFPPPVTAQWDEQIRRLHLLLTVKESAMDVPANLEARRRISFFTNSLFMDMPRAPRVRKMLSFRNSNK SFPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033482 [exp]	0	1
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	8.9	0.7022
AT5G17680			disease resistance protein (TI...		Lus10005588 [exp]	10.7	0.6575
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033315 [exp]	13.8	0.5878
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	17.9	0.6921
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	24.0	0.6913
AT1G05820		ATSPPL5	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10001154 [exp]	24.3	0.6378
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	38.4	0.5900
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	38.5	0.6259
AT2G34140	DOF	AtDof2. 3	Dof-type zinc finger DNA-bindi...		Lus10001896 [exp]	41.1	0.6553
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	41.6	0.6377

Compare expression of checked genes

Lus10033482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.